Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7640 | 5' | -62.8 | NC_001973.1 | + | 158263 | 1.1 | 0.000728 |
Target: 5'- gAGCUGCGCGACGCGCCCUCGCCGUCCc -3' miRNA: 3'- -UCGACGCGCUGCGCGGGAGCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 6423 | 0.8 | 0.090854 |
Target: 5'- cGGCgGCGCGccgacgaGCGCGCCCgUCGCCGgagCCg -3' miRNA: 3'- -UCGaCGCGC-------UGCGCGGG-AGCGGCa--GG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 27876 | 0.8 | 0.098197 |
Target: 5'- cGCggGCGCgGGCGCGCUCUCGCCGcgacUCCc -3' miRNA: 3'- uCGa-CGCG-CUGCGCGGGAGCGGC----AGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 51814 | 0.79 | 0.116887 |
Target: 5'- uGCUGCGCGAgGCGCCCgcgugCGUggugCGUCUg -3' miRNA: 3'- uCGACGCGCUgCGCGGGa----GCG----GCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 53329 | 0.76 | 0.168548 |
Target: 5'- uGCaggGCGuCGAUGCGCCCgCGCCgGUCCc -3' miRNA: 3'- uCGa--CGC-GCUGCGCGGGaGCGG-CAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 35169 | 0.75 | 0.189889 |
Target: 5'- cGCUgGCGCGACGCaGCgaCCUCGUCG-CCg -3' miRNA: 3'- uCGA-CGCGCUGCG-CG--GGAGCGGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 121706 | 0.75 | 0.189889 |
Target: 5'- cGGCgGCgGCGuCGuCGUCCUCGUCGUCCc -3' miRNA: 3'- -UCGaCG-CGCuGC-GCGGGAGCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 10544 | 0.75 | 0.213568 |
Target: 5'- cGGCU-CGaCGACGUGCUCgUCGCCGUUCu -3' miRNA: 3'- -UCGAcGC-GCUGCGCGGG-AGCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 132449 | 0.75 | 0.213568 |
Target: 5'- aGGCgccgGCGgGGCGCGgCCUCGUCGggcucgCCg -3' miRNA: 3'- -UCGa---CGCgCUGCGCgGGAGCGGCa-----GG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 118161 | 0.75 | 0.218598 |
Target: 5'- aAGCUgcaGCGCgGACGCGCCgC-CGCCG-CCg -3' miRNA: 3'- -UCGA---CGCG-CUGCGCGG-GaGCGGCaGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 87116 | 0.75 | 0.218598 |
Target: 5'- cGCgUGCGCGGCGUGCgCgCGCCGgugcgCCg -3' miRNA: 3'- uCG-ACGCGCUGCGCGgGaGCGGCa----GG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 34231 | 0.74 | 0.239738 |
Target: 5'- cAGCU-CGCG-CGCGUCgUUGCUGUCCa -3' miRNA: 3'- -UCGAcGCGCuGCGCGGgAGCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 22971 | 0.73 | 0.268533 |
Target: 5'- cGC-GCgGCGGCGCGCCgaCGCCGacgCCg -3' miRNA: 3'- uCGaCG-CGCUGCGCGGgaGCGGCa--GG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 61121 | 0.73 | 0.278941 |
Target: 5'- cGGCgggGCGCGGCGuCGCuCCUcgagcucguaccggCGCCGcUCCg -3' miRNA: 3'- -UCGa--CGCGCUGC-GCG-GGA--------------GCGGC-AGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 86728 | 0.73 | 0.283319 |
Target: 5'- aGGCUGCGCGgcgacgaacggcggcGCGCGgCCUCGU--UCCg -3' miRNA: 3'- -UCGACGCGC---------------UGCGCgGGAGCGgcAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 8810 | 0.73 | 0.287114 |
Target: 5'- cGCgGCGCGAagacaCGacgaGCCCgccCGCCGUCCc -3' miRNA: 3'- uCGaCGCGCU-----GCg---CGGGa--GCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 31979 | 0.73 | 0.287114 |
Target: 5'- gGGCUGCGCGccgaucuccgcCGCGCUCagGCCGUgCa -3' miRNA: 3'- -UCGACGCGCu----------GCGCGGGagCGGCAgG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 118443 | 0.72 | 0.293529 |
Target: 5'- gAGCgcaaGCGCGACaaaugGCGCCCgcCGUCGUCg -3' miRNA: 3'- -UCGa---CGCGCUG-----CGCGGGa-GCGGCAGg -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 76223 | 0.72 | 0.293529 |
Target: 5'- cGCUGacCGCGACGCGgCggcCGCCGUCUa -3' miRNA: 3'- uCGAC--GCGCUGCGCgGga-GCGGCAGG- -5' |
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7640 | 5' | -62.8 | NC_001973.1 | + | 78195 | 0.72 | 0.306693 |
Target: 5'- gGGCaUGCGCaucaacgaGGCGCGCCaCUUGaCCGUCg -3' miRNA: 3'- -UCG-ACGCG--------CUGCGCGG-GAGC-GGCAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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