miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 896 0.67 0.573177
Target:  5'- cAGCU-CGCG-CGCGUUCUCgaGCCG-CCg -3'
miRNA:   3'- -UCGAcGCGCuGCGCGGGAG--CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 2885 0.67 0.582773
Target:  5'- cGGCggacGCGCGucguCGCGCUuugCUCGCCG-Cg -3'
miRNA:   3'- -UCGa---CGCGCu---GCGCGG---GAGCGGCaGg -5'
7640 5' -62.8 NC_001973.1 + 3269 0.67 0.577011
Target:  5'- uGCUGCaaGGCgGCGCCCaugaagaucaaacggUCGCgCGUCg -3'
miRNA:   3'- uCGACGcgCUG-CGCGGG---------------AGCG-GCAGg -5'
7640 5' -62.8 NC_001973.1 + 3564 0.66 0.647592
Target:  5'- cGGCgggGCGCGcgaugaccgacggcGCGCGCUucggCUCGUacagcaCGUCCa -3'
miRNA:   3'- -UCGa--CGCGC--------------UGCGCGG----GAGCG------GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 4210 0.66 0.621417
Target:  5'- uGCaUGCGCuggaaGGCGCGCCUgccggCGCuCGUUUg -3'
miRNA:   3'- uCG-ACGCG-----CUGCGCGGGa----GCG-GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 5658 0.7 0.419524
Target:  5'- cGGCUGCGCucGCGCGUuuUCG-CGUCg -3'
miRNA:   3'- -UCGACGCGc-UGCGCGggAGCgGCAGg -5'
7640 5' -62.8 NC_001973.1 + 5894 0.7 0.418692
Target:  5'- cAGCgcGCGCGACGCGaacgagaUCCUCGCguCGcCCg -3'
miRNA:   3'- -UCGa-CGCGCUGCGC-------GGGAGCG--GCaGG- -5'
7640 5' -62.8 NC_001973.1 + 5940 0.7 0.387055
Target:  5'- cGCacgaUGCGCGACGCGgCCggcggaugCGaCGUCCu -3'
miRNA:   3'- uCG----ACGCGCUGCGCgGGa-------GCgGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 6117 0.66 0.650497
Target:  5'- cGGC-GCGCGAgGgCGCCgCgauaCGCCG-CCu -3'
miRNA:   3'- -UCGaCGCGCUgC-GCGG-Ga---GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 6423 0.8 0.090854
Target:  5'- cGGCgGCGCGccgacgaGCGCGCCCgUCGCCGgagCCg -3'
miRNA:   3'- -UCGaCGCGC-------UGCGCGGG-AGCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 7088 0.67 0.592401
Target:  5'- gAGUUGagucCGGCGCGCgCgacCGCCGUCg -3'
miRNA:   3'- -UCGACgc--GCUGCGCGgGa--GCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 7268 0.7 0.387055
Target:  5'- gGGCUcggcGCGCGGCGCGCCCgcuaCCGggUCa -3'
miRNA:   3'- -UCGA----CGCGCUGCGCGGGagc-GGCa-GG- -5'
7640 5' -62.8 NC_001973.1 + 7325 0.67 0.563618
Target:  5'- --gUGCGCGGCcCGCCCguguUUGUCGUCg -3'
miRNA:   3'- ucgACGCGCUGcGCGGG----AGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 7628 0.68 0.507341
Target:  5'- gAGCa--GCuGCGCGCgCUCGCCG-CCa -3'
miRNA:   3'- -UCGacgCGcUGCGCGgGAGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 8433 0.7 0.41043
Target:  5'- cGCcGCGuCGuCGCGCCCgucgacgaaccgcUCGCCGaCCa -3'
miRNA:   3'- uCGaCGC-GCuGCGCGGG-------------AGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 8591 0.67 0.581812
Target:  5'- gAGCcGCGCGAgaaagccggcggcCGCGCCgCggacgaCGCCG-CCg -3'
miRNA:   3'- -UCGaCGCGCU-------------GCGCGG-Ga-----GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 8810 0.73 0.287114
Target:  5'- cGCgGCGCGAagacaCGacgaGCCCgccCGCCGUCCc -3'
miRNA:   3'- uCGaCGCGCU-----GCg---CGGGa--GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 10403 0.67 0.602055
Target:  5'- gAGCUGCGUGAC-CaGCCCg-GgCGUCa -3'
miRNA:   3'- -UCGACGCGCUGcG-CGGGagCgGCAGg -5'
7640 5' -62.8 NC_001973.1 + 10491 0.67 0.573177
Target:  5'- gGGUUGCacgaGCGG-GCGCgCUCGCgGUUCa -3'
miRNA:   3'- -UCGACG----CGCUgCGCGgGAGCGgCAGG- -5'
7640 5' -62.8 NC_001973.1 + 10544 0.75 0.213568
Target:  5'- cGGCU-CGaCGACGUGCUCgUCGCCGUUCu -3'
miRNA:   3'- -UCGAcGC-GCUGCGCGGG-AGCGGCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.