miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 158630 0.67 0.554102
Target:  5'- cGCcGCcCGGCGCGCCCgaCGacCCGUUCg -3'
miRNA:   3'- uCGaCGcGCUGCGCGGGa-GC--GGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 158263 1.1 0.000728
Target:  5'- gAGCUGCGCGACGCGCCCUCGCCGUCCc -3'
miRNA:   3'- -UCGACGCGCUGCGCGGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 155908 0.66 0.646623
Target:  5'- gGGgUGCcCGGCGauuacgaacacaaGgCCUCGUCGUCCa -3'
miRNA:   3'- -UCgACGcGCUGCg------------CgGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 154208 0.67 0.573177
Target:  5'- gGGCUGCGacaGGCccaaGUCCUcuucCGCCGUCUc -3'
miRNA:   3'- -UCGACGCg--CUGcg--CGGGA----GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 145034 0.66 0.650497
Target:  5'- uGCgGCGCGAgCGCGUCgagCGCCGaCUc -3'
miRNA:   3'- uCGaCGCGCU-GCGCGGga-GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 143512 0.66 0.650497
Target:  5'- cGCUcacGCcgGUGACGCGCCCgauGCUGgCCg -3'
miRNA:   3'- uCGA---CG--CGCUGCGCGGGag-CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 143173 0.68 0.489102
Target:  5'- cGGCUGCGUGgaucggagaguGCGCGCUCUucUGCUGUg- -3'
miRNA:   3'- -UCGACGCGC-----------UGCGCGGGA--GCGGCAgg -5'
7640 5' -62.8 NC_001973.1 + 141349 0.67 0.586621
Target:  5'- aAGCUcGaCGCGaACGCGCgauuccCCUCggugcacgccaacgaGCCGUCCc -3'
miRNA:   3'- -UCGA-C-GCGC-UGCGCG------GGAG---------------CGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 140885 0.69 0.435513
Target:  5'- -uCUGCGCGGCGUcgcgcgcgacccaGCCCUCGCaccCCu -3'
miRNA:   3'- ucGACGCGCUGCG-------------CGGGAGCGgcaGG- -5'
7640 5' -62.8 NC_001973.1 + 139912 0.71 0.341559
Target:  5'- uGCUGCGCGccauGCGCGCCauguCUCGCuucgagcacaaCGUCUu -3'
miRNA:   3'- uCGACGCGC----UGCGCGG----GAGCG-----------GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 138431 0.66 0.631112
Target:  5'- aAGUUGCGCG-CGCGCggaaaggCGCgCGUCa -3'
miRNA:   3'- -UCGACGCGCuGCGCGgga----GCG-GCAGg -5'
7640 5' -62.8 NC_001973.1 + 138198 0.68 0.53522
Target:  5'- uGGCggacaGCaCGACGCgGCCCUCGaucggcacuaucUCGUCCu -3'
miRNA:   3'- -UCGa----CGcGCUGCG-CGGGAGC------------GGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 136586 0.71 0.363815
Target:  5'- cGCgccgGCGCGACGCucagcucgucggGCgCCUCGgCGUCg -3'
miRNA:   3'- uCGa---CGCGCUGCG------------CG-GGAGCgGCAGg -5'
7640 5' -62.8 NC_001973.1 + 135388 0.69 0.477413
Target:  5'- cAGCUacaucgcaaGgGCGGCGCGCUgggaagacgacaugUaCGCCGUCCa -3'
miRNA:   3'- -UCGA---------CgCGCUGCGCGG--------------GaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 133482 0.68 0.53522
Target:  5'- cAGC-GgGCGAgCaCGCUCgCGCCGUCCa -3'
miRNA:   3'- -UCGaCgCGCU-GcGCGGGaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 132449 0.75 0.213568
Target:  5'- aGGCgccgGCGgGGCGCGgCCUCGUCGggcucgCCg -3'
miRNA:   3'- -UCGa---CGCgCUGCGCgGGAGCGGCa-----GG- -5'
7640 5' -62.8 NC_001973.1 + 132176 0.66 0.640808
Target:  5'- uGUUG-GUGAC-CGUCCucgUCGCUGUCCa -3'
miRNA:   3'- uCGACgCGCUGcGCGGG---AGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 124767 0.67 0.577011
Target:  5'- cGgUGCGCG-CGCGCUCUguucgacuaucuggcCGCCGgcgagggCCg -3'
miRNA:   3'- uCgACGCGCuGCGCGGGA---------------GCGGCa------GG- -5'
7640 5' -62.8 NC_001973.1 + 124330 0.66 0.640808
Target:  5'- gAGCUGCacgcCGACGUGgCg--GCCGUCCu -3'
miRNA:   3'- -UCGACGc---GCUGCGCgGgagCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 123289 0.67 0.544635
Target:  5'- gGGCagGCGCGGCcaGCGCaCCgcguaGCCG-CCg -3'
miRNA:   3'- -UCGa-CGCGCUG--CGCG-GGag---CGGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.