miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 10760 0.67 0.581812
Target:  5'- cGGgUGCGCGACGgGCUCgUCGUguugcaccagcagCGUCg -3'
miRNA:   3'- -UCgACGCGCUGCgCGGG-AGCG-------------GCAGg -5'
7640 5' -62.8 NC_001973.1 + 14397 0.68 0.489102
Target:  5'- uAGCc-CGCGAacaGCGCUCUCGUCagGUCCu -3'
miRNA:   3'- -UCGacGCGCUg--CGCGGGAGCGG--CAGG- -5'
7640 5' -62.8 NC_001973.1 + 17822 0.7 0.403082
Target:  5'- cGUUGaGCGACGCGCCgUCGaggguggcgugcCCGUCg -3'
miRNA:   3'- uCGACgCGCUGCGCGGgAGC------------GGCAGg -5'
7640 5' -62.8 NC_001973.1 + 21568 0.66 0.660174
Target:  5'- cGGC-GCGCGGgGUugaaGUgCUCGCCGgCCg -3'
miRNA:   3'- -UCGaCGCGCUgCG----CGgGAGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 22971 0.73 0.268533
Target:  5'- cGC-GCgGCGGCGCGCCgaCGCCGacgCCg -3'
miRNA:   3'- uCGaCG-CGCUGCGCGGgaGCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 23152 0.66 0.611729
Target:  5'- uGCcGCGCGGCGCucaaacGCCUcuUCGCgCG-CCa -3'
miRNA:   3'- uCGaCGCGCUGCG------CGGG--AGCG-GCaGG- -5'
7640 5' -62.8 NC_001973.1 + 23691 0.67 0.592401
Target:  5'- cGC-GCGuCGACGCGCCagcugcgCGCCaagCCg -3'
miRNA:   3'- uCGaCGC-GCUGCGCGGga-----GCGGca-GG- -5'
7640 5' -62.8 NC_001973.1 + 23817 0.7 0.411252
Target:  5'- -----gGCGACGCgGCCCUCGCCGagUUCa -3'
miRNA:   3'- ucgacgCGCUGCG-CGGGAGCGGC--AGG- -5'
7640 5' -62.8 NC_001973.1 + 24140 0.66 0.611729
Target:  5'- cGGgUGCGCG-CGcCGCCCgccucggCGCUGgcgcugCCg -3'
miRNA:   3'- -UCgACGCGCuGC-GCGGGa------GCGGCa-----GG- -5'
7640 5' -62.8 NC_001973.1 + 25643 0.68 0.507341
Target:  5'- gGGCgcGCGuCGACGCggagccgaaGCCgUCGCCGaagCCg -3'
miRNA:   3'- -UCGa-CGC-GCUGCG---------CGGgAGCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 25714 0.69 0.436365
Target:  5'- aAGCcuUGCGCG-C-CGCCCgCGCCG-CCg -3'
miRNA:   3'- -UCG--ACGCGCuGcGCGGGaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 25942 0.66 0.650497
Target:  5'- gGGCU-CGCGGC-CGaguccUCCUCGUCGUCUu -3'
miRNA:   3'- -UCGAcGCGCUGcGC-----GGGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 26200 0.66 0.660174
Target:  5'- cAGUUGCGgaagGACGCcaGCCUgCGUCGUUCg -3'
miRNA:   3'- -UCGACGCg---CUGCG--CGGGaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 27529 0.66 0.621417
Target:  5'- cAGUUGgGCGGCuuguaGCaGUCCUC-CCGUCUg -3'
miRNA:   3'- -UCGACgCGCUG-----CG-CGGGAGcGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 27876 0.8 0.098197
Target:  5'- cGCggGCGCgGGCGCGCUCUCGCCGcgacUCCc -3'
miRNA:   3'- uCGa-CGCG-CUGCGCGGGAGCGGC----AGG- -5'
7640 5' -62.8 NC_001973.1 + 28260 0.66 0.611729
Target:  5'- cAGCgUGCGCaacuCGCGaUCUCGCCGcgCCu -3'
miRNA:   3'- -UCG-ACGCGcu--GCGCgGGAGCGGCa-GG- -5'
7640 5' -62.8 NC_001973.1 + 28653 0.68 0.516569
Target:  5'- cAGCUGCGCGAgCGCGgCgucgagcgCGCUG-CCa -3'
miRNA:   3'- -UCGACGCGCU-GCGCgGga------GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 31727 0.69 0.480098
Target:  5'- cGUUGCGCGACagcaGCGCCggguggGCCGUgCCg -3'
miRNA:   3'- uCGACGCGCUG----CGCGGgag---CGGCA-GG- -5'
7640 5' -62.8 NC_001973.1 + 31979 0.73 0.287114
Target:  5'- gGGCUGCGCGccgaucuccgcCGCGCUCagGCCGUgCa -3'
miRNA:   3'- -UCGACGCGCu----------GCGCGGGagCGGCAgG- -5'
7640 5' -62.8 NC_001973.1 + 32397 0.72 0.313442
Target:  5'- gGGCUGCuccaCGGCGacaGCCCggcgaacacgUUGCCGUCCu -3'
miRNA:   3'- -UCGACGc---GCUGCg--CGGG----------AGCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.