miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7642 3' -60.2 NC_001973.1 + 155935 1.13 0.000934
Target:  5'- gCCUCGUCGUCCACCCCGUCGGCCUCCg -3'
miRNA:   3'- -GGAGCAGCAGGUGGGGCAGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 86960 0.72 0.478292
Target:  5'- gCCgacggCGcCGUCCGCCCCGcccgCGGCg-CCg -3'
miRNA:   3'- -GGa----GCaGCAGGUGGGGCa---GCCGgaGG- -5'
7642 3' -60.2 NC_001973.1 + 116920 0.71 0.496298
Target:  5'- cCCUUGUCGUacaCCugCUCGUUGGUCUg- -3'
miRNA:   3'- -GGAGCAGCA---GGugGGGCAGCCGGAgg -5'
7642 3' -60.2 NC_001973.1 + 63015 0.71 0.514603
Target:  5'- aUCUCGUCGaggcucaacgCCACCCgcuCGUCGGgCUCg -3'
miRNA:   3'- -GGAGCAGCa---------GGUGGG---GCAGCCgGAGg -5'
7642 3' -60.2 NC_001973.1 + 112991 0.71 0.514603
Target:  5'- gCCUCGUagcauugcCGaUUgAUCgCGUCGGCCUCCu -3'
miRNA:   3'- -GGAGCA--------GC-AGgUGGgGCAGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 74715 0.7 0.551985
Target:  5'- gCCUCGUCGaagCgCuCCCCGUgCGGgCaCUCCa -3'
miRNA:   3'- -GGAGCAGCa--G-GuGGGGCA-GCC-G-GAGG- -5'
7642 3' -60.2 NC_001973.1 + 39655 0.7 0.551985
Target:  5'- ---aGcCGUCCACgcgCCCGUCGuGCUUCCa -3'
miRNA:   3'- ggagCaGCAGGUG---GGGCAGC-CGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 132188 0.7 0.561465
Target:  5'- uCCUCGUCGcugUCCAUUU--UCGGUCUCCu -3'
miRNA:   3'- -GGAGCAGC---AGGUGGGgcAGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 52748 0.7 0.570989
Target:  5'- gUCUCGUCGUCguCGCCCUugaGUaUGGCCgCCa -3'
miRNA:   3'- -GGAGCAGCAG--GUGGGG---CA-GCCGGaGG- -5'
7642 3' -60.2 NC_001973.1 + 31566 0.7 0.580551
Target:  5'- gUUCGUCGggUCCGCCUCGUaguaGGCCa-- -3'
miRNA:   3'- gGAGCAGC--AGGUGGGGCAg---CCGGagg -5'
7642 3' -60.2 NC_001973.1 + 57311 0.7 0.580551
Target:  5'- uCCUCcUCGUcCCGCUcguCCG-CGGCCUCg -3'
miRNA:   3'- -GGAGcAGCA-GGUGG---GGCaGCCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 109029 0.7 0.590146
Target:  5'- gCgUCGgcUCGUCCACCUCGUCucgguugucgGGCCgcgggugCCa -3'
miRNA:   3'- -GgAGC--AGCAGGUGGGGCAG----------CCGGa------GG- -5'
7642 3' -60.2 NC_001973.1 + 25960 0.7 0.599768
Target:  5'- uCCUCGUCGUCUuCgUCGUCGucGUCUCg -3'
miRNA:   3'- -GGAGCAGCAGGuGgGGCAGC--CGGAGg -5'
7642 3' -60.2 NC_001973.1 + 82716 0.69 0.609412
Target:  5'- gCUCG-CGUCCguucuauuauaACCCUGuaUCGGCC-CCa -3'
miRNA:   3'- gGAGCaGCAGG-----------UGGGGC--AGCCGGaGG- -5'
7642 3' -60.2 NC_001973.1 + 134078 0.68 0.667366
Target:  5'- aCCUUGguggCGaCCGCUCgGUCGGCCa-- -3'
miRNA:   3'- -GGAGCa---GCaGGUGGGgCAGCCGGagg -5'
7642 3' -60.2 NC_001973.1 + 46480 0.68 0.667366
Target:  5'- gCCUcCGUCGccgUCGCCCgCGcggaCGGCCUCg -3'
miRNA:   3'- -GGA-GCAGCa--GGUGGG-GCa---GCCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 72860 0.68 0.686554
Target:  5'- --cCGUCG-CCGCCUCG-CGcGCCUCg -3'
miRNA:   3'- ggaGCAGCaGGUGGGGCaGC-CGGAGg -5'
7642 3' -60.2 NC_001973.1 + 73138 0.68 0.696092
Target:  5'- aCCUCGucgauuuuguccUCGUCCGcguCCUCGUCcGCgUCCu -3'
miRNA:   3'- -GGAGC------------AGCAGGU---GGGGCAGcCGgAGG- -5'
7642 3' -60.2 NC_001973.1 + 83050 0.68 0.715017
Target:  5'- --gCGccCGUCgAgCCCG-CGGCCUCCu -3'
miRNA:   3'- ggaGCa-GCAGgUgGGGCaGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 96219 0.67 0.74291
Target:  5'- aCCagaGUCG-CCGCCCCGUC-GCCg-- -3'
miRNA:   3'- -GGag-CAGCaGGUGGGGCAGcCGGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.