miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7642 3' -60.2 NC_001973.1 + 25960 0.7 0.599768
Target:  5'- uCCUCGUCGUCUuCgUCGUCGucGUCUCg -3'
miRNA:   3'- -GGAGCAGCAGGuGgGGCAGC--CGGAGg -5'
7642 3' -60.2 NC_001973.1 + 26606 0.66 0.787567
Target:  5'- gCCUCGacCG-CC-UCCCGUuuggCGGCUUCCa -3'
miRNA:   3'- -GGAGCa-GCaGGuGGGGCA----GCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 28214 0.66 0.821093
Target:  5'- ---aGUCGgCCACCCCGgagCGGCgaCa -3'
miRNA:   3'- ggagCAGCaGGUGGGGCa--GCCGgaGg -5'
7642 3' -60.2 NC_001973.1 + 31566 0.7 0.580551
Target:  5'- gUUCGUCGggUCCGCCUCGUaguaGGCCa-- -3'
miRNA:   3'- gGAGCAGC--AGGUGGGGCAg---CCGGagg -5'
7642 3' -60.2 NC_001973.1 + 32782 0.67 0.770025
Target:  5'- uCCUCGUgCGacuuUUCGCCgCCG-CcGCCUCCg -3'
miRNA:   3'- -GGAGCA-GC----AGGUGG-GGCaGcCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 34364 0.67 0.752045
Target:  5'- --gCGUCGcCCuCCgCGUUGGCCUUUa -3'
miRNA:   3'- ggaGCAGCaGGuGGgGCAGCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 35004 0.66 0.805446
Target:  5'- uCCUCGaCGccgccugcggcaacgCCACCCUccucgCGGCCUUCg -3'
miRNA:   3'- -GGAGCaGCa--------------GGUGGGGca---GCCGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 37835 0.66 0.812924
Target:  5'- gCgUCGUCGcCCGCgUCGUCGucGCUUCg -3'
miRNA:   3'- -GgAGCAGCaGGUGgGGCAGC--CGGAGg -5'
7642 3' -60.2 NC_001973.1 + 39655 0.7 0.551985
Target:  5'- ---aGcCGUCCACgcgCCCGUCGuGCUUCCa -3'
miRNA:   3'- ggagCaGCAGGUG---GGGCAGC-CGGAGG- -5'
7642 3' -60.2 NC_001973.1 + 46480 0.68 0.667366
Target:  5'- gCCUcCGUCGccgUCGCCCgCGcggaCGGCCUCg -3'
miRNA:   3'- -GGA-GCAGCa--GGUGGG-GCa---GCCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 52748 0.7 0.570989
Target:  5'- gUCUCGUCGUCguCGCCCUugaGUaUGGCCgCCa -3'
miRNA:   3'- -GGAGCAGCAG--GUGGGG---CA-GCCGGaGG- -5'
7642 3' -60.2 NC_001973.1 + 57311 0.7 0.580551
Target:  5'- uCCUCcUCGUcCCGCUcguCCG-CGGCCUCg -3'
miRNA:   3'- -GGAGcAGCA-GGUGG---GGCaGCCGGAGg -5'
7642 3' -60.2 NC_001973.1 + 63015 0.71 0.514603
Target:  5'- aUCUCGUCGaggcucaacgCCACCCgcuCGUCGGgCUCg -3'
miRNA:   3'- -GGAGCAGCa---------GGUGGG---GCAGCCgGAGg -5'
7642 3' -60.2 NC_001973.1 + 72860 0.68 0.686554
Target:  5'- --cCGUCG-CCGCCUCG-CGcGCCUCg -3'
miRNA:   3'- ggaGCAGCaGGUGGGGCaGC-CGGAGg -5'
7642 3' -60.2 NC_001973.1 + 73054 0.66 0.787567
Target:  5'- uCCUCGuccUCGUCCucguCCUCGUCGauuuuguCCUCg -3'
miRNA:   3'- -GGAGC---AGCAGGu---GGGGCAGCc------GGAGg -5'
7642 3' -60.2 NC_001973.1 + 73138 0.68 0.696092
Target:  5'- aCCUCGucgauuuuguccUCGUCCGcguCCUCGUCcGCgUCCu -3'
miRNA:   3'- -GGAGC------------AGCAGGU---GGGGCAGcCGgAGG- -5'
7642 3' -60.2 NC_001973.1 + 74715 0.7 0.551985
Target:  5'- gCCUCGUCGaagCgCuCCCCGUgCGGgCaCUCCa -3'
miRNA:   3'- -GGAGCAGCa--G-GuGGGGCA-GCC-G-GAGG- -5'
7642 3' -60.2 NC_001973.1 + 77546 0.66 0.787567
Target:  5'- gCCUCGUCGUCggCGCuCCUGacgaUGGCCcaCCa -3'
miRNA:   3'- -GGAGCAGCAG--GUG-GGGCa---GCCGGa-GG- -5'
7642 3' -60.2 NC_001973.1 + 82716 0.69 0.609412
Target:  5'- gCUCG-CGUCCguucuauuauaACCCUGuaUCGGCC-CCa -3'
miRNA:   3'- gGAGCaGCAGG-----------UGGGGC--AGCCGGaGG- -5'
7642 3' -60.2 NC_001973.1 + 83050 0.68 0.715017
Target:  5'- --gCGccCGUCgAgCCCG-CGGCCUCCu -3'
miRNA:   3'- ggaGCa-GCAGgUgGGGCaGCCGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.