Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7642 | 3' | -60.2 | NC_001973.1 | + | 158278 | 0.67 | 0.770025 |
Target: 5'- cCCUCGcCGUCCcCCUCGccCGaGCCgauuuUCCa -3' miRNA: 3'- -GGAGCaGCAGGuGGGGCa-GC-CGG-----AGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 155935 | 1.13 | 0.000934 |
Target: 5'- gCCUCGUCGUCCACCCCGUCGGCCUCCg -3' miRNA: 3'- -GGAGCAGCAGGUGGGGCAGCCGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 150212 | 0.66 | 0.796154 |
Target: 5'- gCCUCGg---CUugCUgGgCGGCCUCCa -3' miRNA: 3'- -GGAGCagcaGGugGGgCaGCCGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 134078 | 0.68 | 0.667366 |
Target: 5'- aCCUUGguggCGaCCGCUCgGUCGGCCa-- -3' miRNA: 3'- -GGAGCa---GCaGGUGGGgCAGCCGGagg -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 132188 | 0.7 | 0.561465 |
Target: 5'- uCCUCGUCGcugUCCAUUU--UCGGUCUCCu -3' miRNA: 3'- -GGAGCAGC---AGGUGGGgcAGCCGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 121038 | 0.67 | 0.750225 |
Target: 5'- aCCUCuugcugcaccgCGUCCACCuuGUCgcucagGGCCUUg -3' miRNA: 3'- -GGAGca---------GCAGGUGGggCAG------CCGGAGg -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 116920 | 0.71 | 0.496298 |
Target: 5'- cCCUUGUCGUacaCCugCUCGUUGGUCUg- -3' miRNA: 3'- -GGAGCAGCA---GGugGGGCAGCCGGAgg -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 112991 | 0.71 | 0.514603 |
Target: 5'- gCCUCGUagcauugcCGaUUgAUCgCGUCGGCCUCCu -3' miRNA: 3'- -GGAGCA--------GC-AGgUGGgGCAGCCGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 109029 | 0.7 | 0.590146 |
Target: 5'- gCgUCGgcUCGUCCACCUCGUCucgguugucgGGCCgcgggugCCa -3' miRNA: 3'- -GgAGC--AGCAGGUGGGGCAG----------CCGGa------GG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 105914 | 0.66 | 0.803769 |
Target: 5'- gCCUCGUCGaugCCGaaaaacucuucguCCgCGUCGaGCUUCUu -3' miRNA: 3'- -GGAGCAGCa--GGU-------------GGgGCAGC-CGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 100948 | 0.66 | 0.787567 |
Target: 5'- gCUCGgccacCGuuUCCACgUCGcUCGGCCUCg -3' miRNA: 3'- gGAGCa----GC--AGGUGgGGC-AGCCGGAGg -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 97005 | 0.66 | 0.787567 |
Target: 5'- gCCUCGUCG--CGCgCCGUCGcCCUgCa -3' miRNA: 3'- -GGAGCAGCagGUGgGGCAGCcGGAgG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 96219 | 0.67 | 0.74291 |
Target: 5'- aCCagaGUCG-CCGCCCCGUC-GCCg-- -3' miRNA: 3'- -GGag-CAGCaGGUGGGGCAGcCGGagg -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 89099 | 0.67 | 0.770025 |
Target: 5'- -gUCGUCGUCgaGCUCCG-CGGgcgcgcucuCCUCCu -3' miRNA: 3'- ggAGCAGCAGg-UGGGGCaGCC---------GGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 88886 | 0.66 | 0.812924 |
Target: 5'- gCCUCGUCGUgCAgUCCGU--GCUUCg -3' miRNA: 3'- -GGAGCAGCAgGUgGGGCAgcCGGAGg -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 86960 | 0.72 | 0.478292 |
Target: 5'- gCCgacggCGcCGUCCGCCCCGcccgCGGCg-CCg -3' miRNA: 3'- -GGa----GCaGCAGGUGGGGCa---GCCGgaGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 85979 | 0.66 | 0.804609 |
Target: 5'- aCUCGUUcUCgCuCCUCGaCGGCCUCUu -3' miRNA: 3'- gGAGCAGcAG-GuGGGGCaGCCGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 83050 | 0.68 | 0.715017 |
Target: 5'- --gCGccCGUCgAgCCCG-CGGCCUCCu -3' miRNA: 3'- ggaGCa-GCAGgUgGGGCaGCCGGAGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 82716 | 0.69 | 0.609412 |
Target: 5'- gCUCG-CGUCCguucuauuauaACCCUGuaUCGGCC-CCa -3' miRNA: 3'- gGAGCaGCAGG-----------UGGGGC--AGCCGGaGG- -5' |
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7642 | 3' | -60.2 | NC_001973.1 | + | 77546 | 0.66 | 0.787567 |
Target: 5'- gCCUCGUCGUCggCGCuCCUGacgaUGGCCcaCCa -3' miRNA: 3'- -GGAGCAGCAG--GUG-GGGCa---GCCGGa-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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