miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 39712 0.68 0.55467
Target:  5'- cGUCGAGCagcGCGGcCGCCauGUCCGCg -3'
miRNA:   3'- -CGGCUCGga-CGUCuGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 39762 0.67 0.612702
Target:  5'- cCCGAGCCgaaGCuGACGUacaCGAcUCCGCg -3'
miRNA:   3'- cGGCUCGGa--CGuCUGCG---GCUcGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 40746 0.67 0.602961
Target:  5'- -aUGGGUCgccGCGGACGCgcuGCCCGCu -3'
miRNA:   3'- cgGCUCGGa--CGUCUGCGgcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 41836 0.66 0.661473
Target:  5'- aCCGAGCC-GCGGcUGCuCGAGCUgaagauccgaguCGCg -3'
miRNA:   3'- cGGCUCGGaCGUCuGCG-GCUCGG------------GCG- -5'
7645 5' -62.1 NC_001973.1 + 42463 0.66 0.690535
Target:  5'- cGCCGAcGCCgacGCcGACGCCGAcgacgacuuGUCCu- -3'
miRNA:   3'- -CGGCU-CGGa--CGuCUGCGGCU---------CGGGcg -5'
7645 5' -62.1 NC_001973.1 + 42507 0.67 0.602961
Target:  5'- -aCGAGCC---GGACGUCGAGCCgGa -3'
miRNA:   3'- cgGCUCGGacgUCUGCGGCUCGGgCg -5'
7645 5' -62.1 NC_001973.1 + 44552 0.75 0.221457
Target:  5'- cGCCG-GCgCUGCaauuuauAGGCGCCGcccgcuuucguguAGCCCGCg -3'
miRNA:   3'- -CGGCuCG-GACG-------UCUGCGGC-------------UCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 45209 0.76 0.197795
Target:  5'- gGCCGGGCgcgaUGCGGGCcgcgugcuGCCG-GCCCGCc -3'
miRNA:   3'- -CGGCUCGg---ACGUCUG--------CGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 46473 0.67 0.583543
Target:  5'- cGCCGccGCCU-CcGuCGCCGucGCCCGCg -3'
miRNA:   3'- -CGGCu-CGGAcGuCuGCGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 46535 0.67 0.622457
Target:  5'- -gCGAcGCCUcGCAacaGCGCCGAccgGCCCGUc -3'
miRNA:   3'- cgGCU-CGGA-CGUc--UGCGGCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 47804 0.68 0.535654
Target:  5'- cGCCG-GCCgacGCGuGCGCCaaaucGCCCGCc -3'
miRNA:   3'- -CGGCuCGGa--CGUcUGCGGcu---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 48407 0.7 0.427598
Target:  5'- cGCUGAGCCUGCuccaAGACGCCcaAGCgaCGg -3'
miRNA:   3'- -CGGCUCGGACG----UCUGCGGc-UCGg-GCg -5'
7645 5' -62.1 NC_001973.1 + 48719 0.7 0.436122
Target:  5'- cGCuCGAGUCgUGCuuGCGCCGcuGCUCGCa -3'
miRNA:   3'- -CG-GCUCGG-ACGucUGCGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 52713 0.66 0.641979
Target:  5'- aGUCGAGCCgccGCAGcucgaGCGCCaGGCggCGCg -3'
miRNA:   3'- -CGGCUCGGa--CGUC-----UGCGGcUCGg-GCG- -5'
7645 5' -62.1 NC_001973.1 + 53319 0.79 0.121577
Target:  5'- gGCCGucGUCUGCAgGGCGUCGAugcGCCCGCg -3'
miRNA:   3'- -CGGCu-CGGACGU-CUGCGGCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 53406 0.71 0.370816
Target:  5'- cGCCG-GCacggGCGGAgCGCCGGGCgCGUc -3'
miRNA:   3'- -CGGCuCGga--CGUCU-GCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 53815 0.73 0.305059
Target:  5'- -aCGAGCCgcUGCAgcuggucguagucGACGaCCGAGCUCGCc -3'
miRNA:   3'- cgGCUCGG--ACGU-------------CUGC-GGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 53873 0.67 0.602961
Target:  5'- cGCCGAGC--GCGG-CgGCCGuGgCCGCa -3'
miRNA:   3'- -CGGCUCGgaCGUCuG-CGGCuCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 55821 0.69 0.507578
Target:  5'- cGgCGAcagagGCCUGCGGAcCGgCGAgggcgagcgcGCCCGCa -3'
miRNA:   3'- -CgGCU-----CGGACGUCU-GCgGCU----------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 56338 0.68 0.545135
Target:  5'- cGCCGcGCUcGCGGccGCGCuCGGGCCC-Cg -3'
miRNA:   3'- -CGGCuCGGaCGUC--UGCG-GCUCGGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.