miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 23382 0.7 0.436122
Target:  5'- uCCGAGUacuUUGCGGGCGUgacggCGAGCgCGCa -3'
miRNA:   3'- cGGCUCG---GACGUCUGCG-----GCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 23568 0.77 0.151764
Target:  5'- aGCCG-GCCgGCGGACGCgccGCCCGCg -3'
miRNA:   3'- -CGGCuCGGaCGUCUGCGgcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 24120 0.7 0.439559
Target:  5'- cGCUGAGCCgggcgagcucgcgggUGCGcGCGCC--GCCCGCc -3'
miRNA:   3'- -CGGCUCGG---------------ACGUcUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 25656 0.66 0.661473
Target:  5'- cGCgGAGCCgaaGCcGuCGCCGAaGCCguCGCc -3'
miRNA:   3'- -CGgCUCGGa--CGuCuGCGGCU-CGG--GCG- -5'
7645 5' -62.1 NC_001973.1 + 25709 0.71 0.40263
Target:  5'- cGCCGaAGCCuUGC--GCGCC--GCCCGCg -3'
miRNA:   3'- -CGGC-UCGG-ACGucUGCGGcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 27266 0.66 0.679914
Target:  5'- aGUCGAGCaUGUGGACGCgGAaaucuuuGCgCGCc -3'
miRNA:   3'- -CGGCUCGgACGUCUGCGgCU-------CGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 27867 0.72 0.340762
Target:  5'- gGCCGcGGCC-GCGGGCG-CGGGCgCGCu -3'
miRNA:   3'- -CGGC-UCGGaCGUCUGCgGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 28282 0.74 0.261427
Target:  5'- cGCCGcGCCUcGU-GGCgGCCGAGCgCCGCg -3'
miRNA:   3'- -CGGCuCGGA-CGuCUG-CGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 28643 0.73 0.298404
Target:  5'- -gCGAGuCCUGCAGcugcgcgagcgcgGCGUCGAGCgCGCu -3'
miRNA:   3'- cgGCUC-GGACGUC-------------UGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 28717 0.71 0.394516
Target:  5'- -aUGAGCCgcgaCAGcuucuCGUCGAGCCCGCu -3'
miRNA:   3'- cgGCUCGGac--GUCu----GCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 29954 0.69 0.507578
Target:  5'- cUCGAGCCcGUacagAGACGCCG-GCUCGg -3'
miRNA:   3'- cGGCUCGGaCG----UCUGCGGCuCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 33039 0.72 0.319403
Target:  5'- -aCGAGCCaGCAGAaccaGCCGucGCUCGCc -3'
miRNA:   3'- cgGCUCGGaCGUCUg---CGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 33197 0.83 0.066267
Target:  5'- uUCGAGCCUGUccAGGuCGCCGAGCgCCGCg -3'
miRNA:   3'- cGGCUCGGACG--UCU-GCGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 34957 0.68 0.516871
Target:  5'- cGCCGAGCUgaacGCgcucacGGACGaggugugCGuGCCCGCg -3'
miRNA:   3'- -CGGCUCGGa---CG------UCUGCg------GCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 36318 0.66 0.690535
Target:  5'- cGCCGcGGCCgacgcgGCcGACG-CGGGCCUcgGCg -3'
miRNA:   3'- -CGGC-UCGGa-----CGuCUGCgGCUCGGG--CG- -5'
7645 5' -62.1 NC_001973.1 + 36766 0.68 0.564253
Target:  5'- aCCGAGCgaG-AGGCGCgCGAcgcGCUCGCa -3'
miRNA:   3'- cGGCUCGgaCgUCUGCG-GCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 37239 0.67 0.612702
Target:  5'- -aCGAGCCcGgAGACGagcccggagaCGAGCCuCGCc -3'
miRNA:   3'- cgGCUCGGaCgUCUGCg---------GCUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 37283 0.69 0.507578
Target:  5'- cGCCacGAGCCcGgAGACGagcccggagaCGAGCCCGg -3'
miRNA:   3'- -CGG--CUCGGaCgUCUGCg---------GCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 37323 0.69 0.507578
Target:  5'- -aCGAGCCcGgAGACGagcuucgucaCGAGCCCGg -3'
miRNA:   3'- cgGCUCGGaCgUCUGCg---------GCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 37367 0.69 0.507578
Target:  5'- cGCCacGAGCCcGgAGACGagccucgccaCGAGCCCGg -3'
miRNA:   3'- -CGG--CUCGGaCgUCUGCg---------GCUCGGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.