miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 76200 0.73 0.273527
Target:  5'- -gCGAGCaucaUGCAGu--CCGAGCCCGCu -3'
miRNA:   3'- cgGCUCGg---ACGUCugcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 78611 0.73 0.279743
Target:  5'- -aCGAGUCcGCGGACGaCGAGgCCGCg -3'
miRNA:   3'- cgGCUCGGaCGUCUGCgGCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 119452 0.73 0.286071
Target:  5'- cGCCGcGCCcGCcgccgccGcCGCCGAGCCCGUc -3'
miRNA:   3'- -CGGCuCGGaCGu------CuGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 28643 0.73 0.298404
Target:  5'- -gCGAGuCCUGCAGcugcgcgagcgcgGCGUCGAGCgCGCu -3'
miRNA:   3'- cgGCUC-GGACGUC-------------UGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 155480 0.73 0.299064
Target:  5'- cUCGAGCCcGguGAaucuacCGCCGAGgCCGCu -3'
miRNA:   3'- cGGCUCGGaCguCU------GCGGCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 53815 0.73 0.305059
Target:  5'- -aCGAGCCgcUGCAgcuggucguagucGACGaCCGAGCUCGCc -3'
miRNA:   3'- cgGCUCGG--ACGU-------------CUGC-GGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155442 0.73 0.30573
Target:  5'- gGCCcgguGAGCCUGCucucGAgccCGgUGAGCCCGCu -3'
miRNA:   3'- -CGG----CUCGGACGu---CU---GCgGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 21527 0.72 0.31251
Target:  5'- cGCCGAcguGCCUGaucucGGCGUCGGGCgCGCc -3'
miRNA:   3'- -CGGCU---CGGACgu---CUGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 114426 0.72 0.319403
Target:  5'- -gCGAGCCUGCGcGCgaGCCG-GCUCGCg -3'
miRNA:   3'- cgGCUCGGACGUcUG--CGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 33039 0.72 0.319403
Target:  5'- -aCGAGCCaGCAGAaccaGCCGucGCUCGCc -3'
miRNA:   3'- cgGCUCGGaCGUCUg---CGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 62940 0.72 0.326409
Target:  5'- gGCCGGcGUCgucaGUAGACuuGCgCGAGCCCGCc -3'
miRNA:   3'- -CGGCU-CGGa---CGUCUG--CG-GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 19032 0.72 0.326409
Target:  5'- uGCUGAGCg-GCgAGACGCuCGAGuUCCGCu -3'
miRNA:   3'- -CGGCUCGgaCG-UCUGCG-GCUC-GGGCG- -5'
7645 5' -62.1 NC_001973.1 + 83034 0.72 0.333529
Target:  5'- cGgCGGGCgagGCGGcGCGCCcgucGAGCCCGCg -3'
miRNA:   3'- -CgGCUCGga-CGUC-UGCGG----CUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 142411 0.72 0.333529
Target:  5'- --aGAGCCgGCAGACGaUCGuGCCCGg -3'
miRNA:   3'- cggCUCGGaCGUCUGC-GGCuCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 71737 0.72 0.340762
Target:  5'- cCCGGcGCCcGCGGccgccccggccGCGCCGGGCcCCGCc -3'
miRNA:   3'- cGGCU-CGGaCGUC-----------UGCGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 27867 0.72 0.340762
Target:  5'- gGCCGcGGCC-GCGGGCG-CGGGCgCGCu -3'
miRNA:   3'- -CGGC-UCGGaCGUCUGCgGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 56538 0.71 0.355565
Target:  5'- gGCgGGGCggGCucGGCGCCGAGCUCGa -3'
miRNA:   3'- -CGgCUCGgaCGu-CUGCGGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 155200 0.71 0.355565
Target:  5'- uGCCGAGUUcGCu--C-CCGAGCCCGCu -3'
miRNA:   3'- -CGGCUCGGaCGucuGcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 109160 0.71 0.362373
Target:  5'- aGCCGGGCgaGCcGGucgcccgcgcgcuCGCCGAGCgCGCc -3'
miRNA:   3'- -CGGCUCGgaCGuCU-------------GCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 53406 0.71 0.370816
Target:  5'- cGCCG-GCacggGCGGAgCGCCGGGCgCGUc -3'
miRNA:   3'- -CGGCuCGga--CGUCU-GCGGCUCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.