miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 119185 0.66 0.661473
Target:  5'- cGUCGAGCC----GACGCCGAagaagcgcggcgGCUCGCc -3'
miRNA:   3'- -CGGCUCGGacguCUGCGGCU------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 138793 0.66 0.661473
Target:  5'- aGCCgGAGUC-GCucuuGGCG-CGAGCCCGa -3'
miRNA:   3'- -CGG-CUCGGaCGu---CUGCgGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 41836 0.66 0.661473
Target:  5'- aCCGAGCC-GCGGcUGCuCGAGCUgaagauccgaguCGCg -3'
miRNA:   3'- cGGCUCGGaCGUCuGCG-GCUCGG------------GCG- -5'
7645 5' -62.1 NC_001973.1 + 120573 0.66 0.6605
Target:  5'- uGUCGGGCgUGCuaucacgGGcGCGCCGAG-UCGCg -3'
miRNA:   3'- -CGGCUCGgACG-------UC-UGCGGCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 98060 0.66 0.651733
Target:  5'- --aGAGCgC-GUAGugGCCGuAGCCgCGCu -3'
miRNA:   3'- cggCUCG-GaCGUCugCGGC-UCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 79697 0.66 0.651733
Target:  5'- uGCCGAuuuGCCgGCuuuGGCGCguCGGGUCgGCa -3'
miRNA:   3'- -CGGCU---CGGaCGu--CUGCG--GCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 70135 0.66 0.651733
Target:  5'- uGUCGAGCauggugcGCAGcGCGuCCGcGUCCGCg -3'
miRNA:   3'- -CGGCUCGga-----CGUC-UGC-GGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 82481 0.66 0.651733
Target:  5'- cGCCG-GCCcgaUGgAGACGCgCGccuuGCCgGCg -3'
miRNA:   3'- -CGGCuCGG---ACgUCUGCG-GCu---CGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 86975 0.66 0.651733
Target:  5'- cGCCccGCCcGCGG-CGCCGuccGCcCCGCc -3'
miRNA:   3'- -CGGcuCGGaCGUCuGCGGCu--CG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 95652 0.66 0.650758
Target:  5'- aGCUGGGCCaccagaccgcgcUGUAcGCGCCGucguggcGGCCCGa -3'
miRNA:   3'- -CGGCUCGG------------ACGUcUGCGGC-------UCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 144338 0.66 0.650758
Target:  5'- cCCGGGCaaGCGGAUGCgcgaggacgaggaCGAGCCgcCGCc -3'
miRNA:   3'- cGGCUCGgaCGUCUGCG-------------GCUCGG--GCG- -5'
7645 5' -62.1 NC_001973.1 + 158924 0.66 0.641979
Target:  5'- aGUCGcGCC-GCGcGCGaCCGAgccGCCCGCg -3'
miRNA:   3'- -CGGCuCGGaCGUcUGC-GGCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 81657 0.66 0.641979
Target:  5'- gGCCG-GCCcGCAcagcuuguuCGCCcGGCCCGUg -3'
miRNA:   3'- -CGGCuCGGaCGUcu-------GCGGcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 4874 0.66 0.641979
Target:  5'- cGCCGuGCUcguacaaggGCAGcgcguACGCCGGGUUCGUu -3'
miRNA:   3'- -CGGCuCGGa--------CGUC-----UGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 52713 0.66 0.641979
Target:  5'- aGUCGAGCCgccGCAGcucgaGCGCCaGGCggCGCg -3'
miRNA:   3'- -CGGCUCGGa--CGUC-----UGCGGcUCGg-GCG- -5'
7645 5' -62.1 NC_001973.1 + 128574 0.66 0.641003
Target:  5'- cGCCG-GCaucucGCuGGCGCUGAucagcucgaacacGCCCGCu -3'
miRNA:   3'- -CGGCuCGga---CGuCUGCGGCU-------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155514 0.66 0.632218
Target:  5'- -gUGAGCUUGCcguuGAgcguccCGCCcAGCCCGCu -3'
miRNA:   3'- cgGCUCGGACGu---CU------GCGGcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 70359 0.66 0.632218
Target:  5'- -aCGGGCgaGCGGcCGCUGGGUCgGUa -3'
miRNA:   3'- cgGCUCGgaCGUCuGCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 23228 0.66 0.632218
Target:  5'- cGCaGGGCCUgGCGc-UGCUGAGCgCCGCg -3'
miRNA:   3'- -CGgCUCGGA-CGUcuGCGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 82519 0.66 0.632218
Target:  5'- gGCCG-GCCUGCAGuuggguuuuuaACGCCGA-CCa-- -3'
miRNA:   3'- -CGGCuCGGACGUC-----------UGCGGCUcGGgcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.