miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 151194 0.67 0.626361
Target:  5'- aGCCGAugacaucaugccucgGCCgGCGG-UGCCGGGUCUGa -3'
miRNA:   3'- -CGGCU---------------CGGaCGUCuGCGGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 65606 0.67 0.622457
Target:  5'- cGUCGcGCCUcuaCAGcgacgcgcuaGCGCCGAGCgCGCu -3'
miRNA:   3'- -CGGCuCGGAc--GUC----------UGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 46535 0.67 0.622457
Target:  5'- -gCGAcGCCUcGCAacaGCGCCGAccgGCCCGUc -3'
miRNA:   3'- cgGCU-CGGA-CGUc--UGCGGCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 89104 0.67 0.616603
Target:  5'- cGUCGAGCUccGCGGgcGCGCucuccuccucccaauCGAGCUCGCc -3'
miRNA:   3'- -CGGCUCGGa-CGUC--UGCG---------------GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 37239 0.67 0.612702
Target:  5'- -aCGAGCCcGgAGACGagcccggagaCGAGCCuCGCc -3'
miRNA:   3'- cgGCUCGGaCgUCUGCg---------GCUCGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 39762 0.67 0.612702
Target:  5'- cCCGAGCCgaaGCuGACGUacaCGAcUCCGCg -3'
miRNA:   3'- cGGCUCGGa--CGuCUGCG---GCUcGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 53873 0.67 0.602961
Target:  5'- cGCCGAGC--GCGG-CgGCCGuGgCCGCa -3'
miRNA:   3'- -CGGCUCGgaCGUCuG-CGGCuCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 42507 0.67 0.602961
Target:  5'- -aCGAGCC---GGACGUCGAGCCgGa -3'
miRNA:   3'- cgGCUCGGacgUCUGCGGCUCGGgCg -5'
7645 5' -62.1 NC_001973.1 + 40746 0.67 0.602961
Target:  5'- -aUGGGUCgccGCGGACGCgcuGCCCGCu -3'
miRNA:   3'- cgGCUCGGa--CGUCUGCGgcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 7571 0.67 0.602961
Target:  5'- cGCCucGCCUcGCuGACGaCCGGcGCgCGCa -3'
miRNA:   3'- -CGGcuCGGA-CGuCUGC-GGCU-CGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 127355 0.67 0.602961
Target:  5'- aCUGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 127433 0.67 0.593239
Target:  5'- cUCGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCa -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 84162 0.67 0.593239
Target:  5'- gGCCGAGgCggagaGCGGcgcCGCCGA-CCUGCa -3'
miRNA:   3'- -CGGCUCgGa----CGUCu--GCGGCUcGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 158024 0.67 0.593239
Target:  5'- aUCGGGUgUGCGccGcCGCCGcGCCCGUg -3'
miRNA:   3'- cGGCUCGgACGU--CuGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 104147 0.67 0.583543
Target:  5'- -aCGAGCaCgagGCGGugGaUCGGGCCgGCc -3'
miRNA:   3'- cgGCUCG-Ga--CGUCugC-GGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 46473 0.67 0.583543
Target:  5'- cGCCGccGCCU-CcGuCGCCGucGCCCGCg -3'
miRNA:   3'- -CGGCu-CGGAcGuCuGCGGCu-CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 16435 0.67 0.573879
Target:  5'- cGCuCGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCc -3'
miRNA:   3'- -CG-GCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 10277 0.67 0.573879
Target:  5'- cGUCGcGUCgucgaacGCGGACGCgaAGCCCGCg -3'
miRNA:   3'- -CGGCuCGGa------CGUCUGCGgcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 158332 0.67 0.571951
Target:  5'- cCCGAGCCgGCucGucaacccgcgcccGCGCCGGcucgucaacccgcGCCCGCg -3'
miRNA:   3'- cGGCUCGGaCGu-C-------------UGCGGCU-------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 36766 0.68 0.564253
Target:  5'- aCCGAGCgaG-AGGCGCgCGAcgcGCUCGCa -3'
miRNA:   3'- cGGCUCGgaCgUCUGCG-GCU---CGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.