miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 153911 1.12 0.000533
Target:  5'- cGCCGAGCCUGCAGACGCCGAGCCCGCu -3'
miRNA:   3'- -CGGCUCGGACGUCUGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 153950 1.12 0.000533
Target:  5'- cGCCGAGCCUGCAGACGCCGAGCCCGCu -3'
miRNA:   3'- -CGGCUCGGACGUCUGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 33197 0.83 0.066267
Target:  5'- uUCGAGCCUGUccAGGuCGCCGAGCgCCGCg -3'
miRNA:   3'- cGGCUCGGACG--UCU-GCGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 120826 0.8 0.104656
Target:  5'- cGCCGuGCCcGCGGACGCgGAcGCCgCGCa -3'
miRNA:   3'- -CGGCuCGGaCGUCUGCGgCU-CGG-GCG- -5'
7645 5' -62.1 NC_001973.1 + 53319 0.79 0.121577
Target:  5'- gGCCGucGUCUGCAgGGCGUCGAugcGCCCGCg -3'
miRNA:   3'- -CGGCu-CGGACGU-CUGCGGCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155404 0.79 0.124634
Target:  5'- cGuuGAGCCUGCucucGAgccCGuuGAGCCCGCu -3'
miRNA:   3'- -CggCUCGGACGu---CU---GCggCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 146060 0.78 0.134237
Target:  5'- gGuuGGGCC-GCGG-CGCCGAGCCgGCu -3'
miRNA:   3'- -CggCUCGGaCGUCuGCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 154039 0.78 0.137586
Target:  5'- cGCCGGGCCcgaUGCAGuuugagucuguCGaCGAGCCCGCa -3'
miRNA:   3'- -CGGCUCGG---ACGUCu----------GCgGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 158834 0.78 0.141012
Target:  5'- gGCCGAGCgC-GCGGACGagccgcccaaaCCGAGCUCGCg -3'
miRNA:   3'- -CGGCUCG-GaCGUCUGC-----------GGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155632 0.78 0.144516
Target:  5'- cGCCGAGCUUGCAGcCGCucCGGcGCCCGa -3'
miRNA:   3'- -CGGCUCGGACGUCuGCG--GCU-CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 146104 0.78 0.144516
Target:  5'- gGUCGGGCC-GCGG-CGCUGAGCCgGCu -3'
miRNA:   3'- -CGGCUCGGaCGUCuGCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 155363 0.78 0.1481
Target:  5'- uCUGAGCCUGCucucGGGCccGuuGAGCCCGCu -3'
miRNA:   3'- cGGCUCGGACG----UCUG--CggCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 23568 0.77 0.151764
Target:  5'- aGCCG-GCCgGCGGACGCgccGCCCGCg -3'
miRNA:   3'- -CGGCuCGGaCGUCUGCGgcuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 45209 0.76 0.197795
Target:  5'- gGCCGGGCgcgaUGCGGGCcgcgugcuGCCG-GCCCGCc -3'
miRNA:   3'- -CGGCUCGg---ACGUCUG--------CGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 44552 0.75 0.221457
Target:  5'- cGCCG-GCgCUGCaauuuauAGGCGCCGcccgcuuucguguAGCCCGCg -3'
miRNA:   3'- -CGGCuCG-GACG-------UCUGCGGC-------------UCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 21286 0.75 0.222493
Target:  5'- cGCCGGGCCgucgcuCAGuCGUCGGGCuuGCg -3'
miRNA:   3'- -CGGCUCGGac----GUCuGCGGCUCGggCG- -5'
7645 5' -62.1 NC_001973.1 + 155291 0.74 0.23854
Target:  5'- cCCGAGCCcGCu--C-CCGAGCCCGCu -3'
miRNA:   3'- cGGCUCGGaCGucuGcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 126093 0.74 0.261427
Target:  5'- aGCCcgaGAGCgUGCcGACGCgUGAGCCCGg -3'
miRNA:   3'- -CGG---CUCGgACGuCUGCG-GCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 28282 0.74 0.261427
Target:  5'- cGCCGcGCCUcGU-GGCgGCCGAGCgCCGCg -3'
miRNA:   3'- -CGGCuCGGA-CGuCUG-CGGCUCG-GGCG- -5'
7645 5' -62.1 NC_001973.1 + 68357 0.74 0.267422
Target:  5'- cGUCGGGCUUGUcguuuuGGAUGCCG-GCCgGCa -3'
miRNA:   3'- -CGGCUCGGACG------UCUGCGGCuCGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.