miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 3996 0.66 0.680882
Target:  5'- cGCCGGauaggggacgcGCUUGaacGCGCUGAGCgCGCg -3'
miRNA:   3'- -CGGCU-----------CGGACgucUGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 4874 0.66 0.641979
Target:  5'- cGCCGuGCUcguacaaggGCAGcgcguACGCCGGGUUCGUu -3'
miRNA:   3'- -CGGCuCGGa--------CGUC-----UGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 6409 0.7 0.426751
Target:  5'- gGCCGAGUgcgCggcgGCGGcGCGCCGAcgagcgcGCCCGUc -3'
miRNA:   3'- -CGGCUCG---Ga---CGUC-UGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 7249 0.68 0.516871
Target:  5'- cGUCGAGCagaUGCGcagcgggcucGGCGCgCGGcgcGCCCGCu -3'
miRNA:   3'- -CGGCUCGg--ACGU----------CUGCG-GCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 7571 0.67 0.602961
Target:  5'- cGCCucGCCUcGCuGACGaCCGGcGCgCGCa -3'
miRNA:   3'- -CGGcuCGGA-CGuCUGC-GGCU-CGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 8612 0.7 0.444743
Target:  5'- gGCCGcGCC-GCGGAcgacgcCGCCGAGgCCGa -3'
miRNA:   3'- -CGGCuCGGaCGUCU------GCGGCUCgGGCg -5'
7645 5' -62.1 NC_001973.1 + 8785 0.68 0.535654
Target:  5'- gGCCGAGCgUcaacGCGacggaacccgcGGCGCgaagacacgaCGAGCCCGCc -3'
miRNA:   3'- -CGGCUCGgA----CGU-----------CUGCG----------GCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 10277 0.67 0.573879
Target:  5'- cGUCGcGUCgucgaacGCGGACGCgaAGCCCGCg -3'
miRNA:   3'- -CGGCuCGGa------CGUCUGCGgcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 11661 0.66 0.689571
Target:  5'- gGCCGcuGGCauuucGCuGGCGCUGAucagcucgaacacGCCCGCu -3'
miRNA:   3'- -CGGC--UCGga---CGuCUGCGGCU-------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 12189 0.66 0.690535
Target:  5'- aCUGAGCUcgGCGGACGCguaggauuuuaCGuGCCgGCc -3'
miRNA:   3'- cGGCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 16435 0.67 0.573879
Target:  5'- cGCuCGAGCUcgGCGGACGCguaagauuuuaCGuGCCgGCc -3'
miRNA:   3'- -CG-GCUCGGa-CGUCUGCG-----------GCuCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 18110 0.69 0.485576
Target:  5'- cGCgGAGCCcugguaucucaaguUGUcGGCGCCGAugcccacGCCCGUu -3'
miRNA:   3'- -CGgCUCGG--------------ACGuCUGCGGCU-------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 19032 0.72 0.326409
Target:  5'- uGCUGAGCg-GCgAGACGCuCGAGuUCCGCu -3'
miRNA:   3'- -CGGCUCGgaCG-UCUGCG-GCUC-GGGCG- -5'
7645 5' -62.1 NC_001973.1 + 20922 0.68 0.516871
Target:  5'- cGCgCGAGCCgauUGCGuucUGUCGAGCCgGCg -3'
miRNA:   3'- -CG-GCUCGG---ACGUcu-GCGGCUCGGgCG- -5'
7645 5' -62.1 NC_001973.1 + 21286 0.75 0.222493
Target:  5'- cGCCGGGCCgucgcuCAGuCGUCGGGCuuGCg -3'
miRNA:   3'- -CGGCUCGGac----GUCuGCGGCUCGggCG- -5'
7645 5' -62.1 NC_001973.1 + 21527 0.72 0.31251
Target:  5'- cGCCGAcguGCCUGaucucGGCGUCGGGCgCGCc -3'
miRNA:   3'- -CGGCU---CGGACgu---CUGCGGCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 21641 0.68 0.564253
Target:  5'- aGCCGugcaGGCCgcGCGGcAgGCCGAGCacguagCCGCu -3'
miRNA:   3'- -CGGC----UCGGa-CGUC-UgCGGCUCG------GGCG- -5'
7645 5' -62.1 NC_001973.1 + 22983 0.69 0.507578
Target:  5'- cGCCGAcGCCgacGCcGACGCCGA-CgUGCa -3'
miRNA:   3'- -CGGCU-CGGa--CGuCUGCGGCUcGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 23182 0.68 0.534709
Target:  5'- cGCCacuGCCUGCAcgagauGACGCgcgccgaCGAGCgCGCa -3'
miRNA:   3'- -CGGcu-CGGACGU------CUGCG-------GCUCGgGCG- -5'
7645 5' -62.1 NC_001973.1 + 23228 0.66 0.632218
Target:  5'- cGCaGGGCCUgGCGc-UGCUGAGCgCCGCg -3'
miRNA:   3'- -CGgCUCGGA-CGUcuGCGGCUCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.