miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7645 5' -62.1 NC_001973.1 + 160832 0.69 0.462267
Target:  5'- gGCCgGAGUCgauCAucGAgGUCGAGCCCGCu -3'
miRNA:   3'- -CGG-CUCGGac-GU--CUgCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 160494 0.69 0.489212
Target:  5'- uGCCG-GCCaggGUcgauGGAgGUCGAGCCCGa -3'
miRNA:   3'- -CGGCuCGGa--CG----UCUgCGGCUCGGGCg -5'
7645 5' -62.1 NC_001973.1 + 159377 0.71 0.394516
Target:  5'- gGUCGA-CCUGCAGGCGCCGu-CCCu- -3'
miRNA:   3'- -CGGCUcGGACGUCUGCGGCucGGGcg -5'
7645 5' -62.1 NC_001973.1 + 158924 0.66 0.641979
Target:  5'- aGUCGcGCC-GCGcGCGaCCGAgccGCCCGCg -3'
miRNA:   3'- -CGGCuCGGaCGUcUGC-GGCU---CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 158834 0.78 0.141012
Target:  5'- gGCCGAGCgC-GCGGACGagccgcccaaaCCGAGCUCGCg -3'
miRNA:   3'- -CGGCUCG-GaCGUCUGC-----------GGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 158332 0.67 0.571951
Target:  5'- cCCGAGCCgGCucGucaacccgcgcccGCGCCGGcucgucaacccgcGCCCGCg -3'
miRNA:   3'- cGGCUCGGaCGu-C-------------UGCGGCU-------------CGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 158024 0.67 0.593239
Target:  5'- aUCGGGUgUGCGccGcCGCCGcGCCCGUg -3'
miRNA:   3'- cGGCUCGgACGU--CuGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 157892 0.7 0.427598
Target:  5'- uGUCGgaGGUC-GCGGcCGCCGcGCCCGCg -3'
miRNA:   3'- -CGGC--UCGGaCGUCuGCGGCuCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155632 0.78 0.144516
Target:  5'- cGCCGAGCUUGCAGcCGCucCGGcGCCCGa -3'
miRNA:   3'- -CGGCUCGGACGUCuGCG--GCU-CGGGCg -5'
7645 5' -62.1 NC_001973.1 + 155514 0.66 0.632218
Target:  5'- -gUGAGCUUGCcguuGAgcguccCGCCcAGCCCGCu -3'
miRNA:   3'- cgGCUCGGACGu---CU------GCGGcUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155480 0.73 0.299064
Target:  5'- cUCGAGCCcGguGAaucuacCGCCGAGgCCGCu -3'
miRNA:   3'- cGGCUCGGaCguCU------GCGGCUCgGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155442 0.73 0.30573
Target:  5'- gGCCcgguGAGCCUGCucucGAgccCGgUGAGCCCGCu -3'
miRNA:   3'- -CGG----CUCGGACGu---CU---GCgGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155404 0.79 0.124634
Target:  5'- cGuuGAGCCUGCucucGAgccCGuuGAGCCCGCu -3'
miRNA:   3'- -CggCUCGGACGu---CU---GCggCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155363 0.78 0.1481
Target:  5'- uCUGAGCCUGCucucGGGCccGuuGAGCCCGCu -3'
miRNA:   3'- cGGCUCGGACG----UCUG--CggCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155315 0.71 0.386508
Target:  5'- cCUGAGCCcGCu--C-CCGAGCCCGCu -3'
miRNA:   3'- cGGCUCGGaCGucuGcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155291 0.74 0.23854
Target:  5'- cCCGAGCCcGCu--C-CCGAGCCCGCu -3'
miRNA:   3'- cGGCUCGGaCGucuGcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 155200 0.71 0.355565
Target:  5'- uGCCGAGUUcGCu--C-CCGAGCCCGCu -3'
miRNA:   3'- -CGGCUCGGaCGucuGcGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 154039 0.78 0.137586
Target:  5'- cGCCGGGCCcgaUGCAGuuugagucuguCGaCGAGCCCGCa -3'
miRNA:   3'- -CGGCUCGG---ACGUCu----------GCgGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 153950 1.12 0.000533
Target:  5'- cGCCGAGCCUGCAGACGCCGAGCCCGCu -3'
miRNA:   3'- -CGGCUCGGACGUCUGCGGCUCGGGCG- -5'
7645 5' -62.1 NC_001973.1 + 153911 1.12 0.000533
Target:  5'- cGCCGAGCCUGCAGACGCCGAGCCCGCu -3'
miRNA:   3'- -CGGCUCGGACGUCUGCGGCUCGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.