miRNA display CGI


Results 1 - 20 of 61 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 153460 1.09 0.005204
Target:  5'- uCGGACAAACGGUCGUCGGACAGCGACc -3'
miRNA:   3'- -GCCUGUUUGCCAGCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 110345 0.83 0.215503
Target:  5'- uGGACGcguucgccgccucGGCGGccgCGUCGGACGGCGGCa -3'
miRNA:   3'- gCCUGU-------------UUGCCa--GCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 97978 0.81 0.274494
Target:  5'- aCGGGCAcgacGCGGUCG-CGGuCGGCGACg -3'
miRNA:   3'- -GCCUGUu---UGCCAGCaGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 28948 0.8 0.329889
Target:  5'- gGGGCGgcAGCGGgggccggcaGUCGGGCGGCGACg -3'
miRNA:   3'- gCCUGU--UUGCCag-------CAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 100195 0.79 0.352688
Target:  5'- aGGGCGAGCaacucGGcuUUGUCGGGCGGCGGCa -3'
miRNA:   3'- gCCUGUUUG-----CC--AGCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 153506 0.77 0.436406
Target:  5'- aGGGCuccGACagcucGUCGUCGGACAGCGAa -3'
miRNA:   3'- gCCUGu--UUGc----CAGCAGCCUGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 146085 0.77 0.436406
Target:  5'- uCGGGCGGGCGGggacuaagGUCGGGCcGCGGCg -3'
miRNA:   3'- -GCCUGUUUGCCag------CAGCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 35433 0.76 0.510981
Target:  5'- aCGcGCAAcgcGCGGUCGUCGacgaGGCGGCGGCg -3'
miRNA:   3'- -GCcUGUU---UGCCAGCAGC----CUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 61089 0.76 0.530467
Target:  5'- cCGGGCAGgccgcGCGGcCGaCGGAgCAGCGGCg -3'
miRNA:   3'- -GCCUGUU-----UGCCaGCaGCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 91539 0.75 0.550219
Target:  5'- uGGACGccGGCGGuUCGUCGG-CGGCGuCg -3'
miRNA:   3'- gCCUGU--UUGCC-AGCAGCCuGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 75584 0.74 0.620758
Target:  5'- gCGGACgGAGCGGgCGgagCGGGCggAGCGGCa -3'
miRNA:   3'- -GCCUG-UUUGCCaGCa--GCCUG--UCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 102865 0.73 0.661404
Target:  5'- aGGACGAGCGaGacauucacaaauUgGUCGGACAGCGcGCg -3'
miRNA:   3'- gCCUGUUUGC-C------------AgCAGCCUGUCGC-UG- -5'
7646 5' -54.5 NC_001973.1 + 81170 0.73 0.68162
Target:  5'- aCGGAU---CGGgCGUCGGGuCGGCGGCg -3'
miRNA:   3'- -GCCUGuuuGCCaGCAGCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 144448 0.73 0.691672
Target:  5'- aGGACGcGCGcGU-GUCGGGCGGCGuGCg -3'
miRNA:   3'- gCCUGUuUGC-CAgCAGCCUGUCGC-UG- -5'
7646 5' -54.5 NC_001973.1 + 147010 0.71 0.760163
Target:  5'- uCGGACGAGggcacgaacCGGUUGUUGGGCAGguuguaaccCGGCa -3'
miRNA:   3'- -GCCUGUUU---------GCCAGCAGCCUGUC---------GCUG- -5'
7646 5' -54.5 NC_001973.1 + 121341 0.71 0.769572
Target:  5'- -cGACAGGCGGUCG-CGGuCGugcGCGACc -3'
miRNA:   3'- gcCUGUUUGCCAGCaGCCuGU---CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 39059 0.71 0.77886
Target:  5'- uCGGA--AACGGcgagGUCGGugGGCGGCa -3'
miRNA:   3'- -GCCUguUUGCCag--CAGCCugUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 42524 0.7 0.814628
Target:  5'- cCGGACAAGCcuccCGUCGGA--GCGACg -3'
miRNA:   3'- -GCCUGUUUGcca-GCAGCCUguCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 137822 0.7 0.831564
Target:  5'- uCGGGCA---GGUCGUCGcGCGGCGcCg -3'
miRNA:   3'- -GCCUGUuugCCAGCAGCcUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 152380 0.7 0.847784
Target:  5'- cCGGACGGcCGGcgCGggCGGGCgcggGGCGGCg -3'
miRNA:   3'- -GCCUGUUuGCCa-GCa-GCCUG----UCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.