miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 9657 0.69 0.863231
Target:  5'- gCGGuACAGcCGGUCGcaguuguugcccUCGGcgaACGGCGGCg -3'
miRNA:   3'- -GCC-UGUUuGCCAGC------------AGCC---UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 9761 0.67 0.937468
Target:  5'- aCGGAUAGGCGaUCGUUuuAUAGCGGCc -3'
miRNA:   3'- -GCCUGUUUGCcAGCAGccUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 17045 0.66 0.958539
Target:  5'- uGGu--GGCGGUCGgcgcUUGGGCGGUGAg -3'
miRNA:   3'- gCCuguUUGCCAGC----AGCCUGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 26041 0.66 0.958539
Target:  5'- gCGGGCGAguaGCGcuuGUgGUCGGACAugGCGuCg -3'
miRNA:   3'- -GCCUGUU---UGC---CAgCAGCCUGU--CGCuG- -5'
7646 5' -54.5 NC_001973.1 + 28202 0.67 0.937468
Target:  5'- uGGAgcaAAACGaGUCGgccacccCGGAgCGGCGACa -3'
miRNA:   3'- gCCUg--UUUGC-CAGCa------GCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 28948 0.8 0.329889
Target:  5'- gGGGCGgcAGCGGgggccggcaGUCGGGCGGCGACg -3'
miRNA:   3'- gCCUGU--UUGCCag-------CAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 29013 0.66 0.958539
Target:  5'- uGGGCAcagcACGcGUCG-CGGuacgccuCGGCGACg -3'
miRNA:   3'- gCCUGUu---UGC-CAGCaGCCu------GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 31063 0.66 0.962077
Target:  5'- gCGGGCAGcguGCGGaUCGagaagUUGGcCAGCGAg -3'
miRNA:   3'- -GCCUGUU---UGCC-AGC-----AGCCuGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 35433 0.76 0.510981
Target:  5'- aCGcGCAAcgcGCGGUCGUCGacgaGGCGGCGGCg -3'
miRNA:   3'- -GCcUGUU---UGCCAGCAGC----CUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 38489 0.69 0.855607
Target:  5'- aCGGACAGGuCGGcgCG-CGGAUucgcggugaGGCGGCa -3'
miRNA:   3'- -GCCUGUUU-GCCa-GCaGCCUG---------UCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 39059 0.71 0.77886
Target:  5'- uCGGA--AACGGcgagGUCGGugGGCGGCa -3'
miRNA:   3'- -GCCUguUUGCCag--CAGCCugUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 42524 0.7 0.814628
Target:  5'- cCGGACAAGCcuccCGUCGGA--GCGACg -3'
miRNA:   3'- -GCCUGUUUGcca-GCAGCCUguCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44434 0.67 0.942143
Target:  5'- gGGAuCGAACGGgCGcUCGGGC-GCGGg -3'
miRNA:   3'- gCCU-GUUUGCCaGC-AGCCUGuCGCUg -5'
7646 5' -54.5 NC_001973.1 + 44467 0.67 0.937468
Target:  5'- gGGAuCGAACGGgcgcUCGggcgCGGGCAuCGGCg -3'
miRNA:   3'- gCCU-GUUUGCC----AGCa---GCCUGUcGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44674 0.67 0.942143
Target:  5'- uCGGugAGGCGGcUCGUggaGGcCGGUGAUc -3'
miRNA:   3'- -GCCugUUUGCC-AGCAg--CCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44891 0.69 0.884847
Target:  5'- aCGGAgGuGCGGUCGUUGGGucCAugugcGUGACg -3'
miRNA:   3'- -GCCUgUuUGCCAGCAGCCU--GU-----CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 47687 0.66 0.968514
Target:  5'- aGGAgAuGCGGcCGUacgugcCGGGCGGCaGGCa -3'
miRNA:   3'- gCCUgUuUGCCaGCA------GCCUGUCG-CUG- -5'
7646 5' -54.5 NC_001973.1 + 50087 0.68 0.922032
Target:  5'- gGGGC-GGCGG-CGccaCGGAgGGCGGCg -3'
miRNA:   3'- gCCUGuUUGCCaGCa--GCCUgUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 54038 0.66 0.954779
Target:  5'- uCGGGCA---GGUUGUUGGGCAcGgGGCc -3'
miRNA:   3'- -GCCUGUuugCCAGCAGCCUGU-CgCUG- -5'
7646 5' -54.5 NC_001973.1 + 55225 0.69 0.855607
Target:  5'- gCGGAgGcGGCGG-CGgCGGGCGGCGAg -3'
miRNA:   3'- -GCCUgU-UUGCCaGCaGCCUGUCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.