miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 55412 0.67 0.942143
Target:  5'- -cGAaaacGACGGuuUCGUCGG-CGGCGGCg -3'
miRNA:   3'- gcCUgu--UUGCC--AGCAGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 61089 0.76 0.530467
Target:  5'- cCGGGCAGgccgcGCGGcCGaCGGAgCAGCGGCg -3'
miRNA:   3'- -GCCUGUU-----UGCCaGCaGCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 63627 0.66 0.950796
Target:  5'- aCGGcCAAAuCGGccgCGUgGGGCGGCG-Cg -3'
miRNA:   3'- -GCCuGUUU-GCCa--GCAgCCUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 70359 0.66 0.962077
Target:  5'- aCGGGCGAGCGGcCGcUGGGuCGGUacacuuGACa -3'
miRNA:   3'- -GCCUGUUUGCCaGCaGCCU-GUCG------CUG- -5'
7646 5' -54.5 NC_001973.1 + 75522 0.68 0.898161
Target:  5'- aCGGAgAuuCGaaCG-CGGACAGCGGCu -3'
miRNA:   3'- -GCCUgUuuGCcaGCaGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 75584 0.74 0.620758
Target:  5'- gCGGACgGAGCGGgCGgagCGGGCggAGCGGCa -3'
miRNA:   3'- -GCCUG-UUUGCCaGCa--GCCUG--UCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 76992 0.66 0.958539
Target:  5'- gCGG-CGccACGcugaucaccUCGUCGGGCGGCGGCg -3'
miRNA:   3'- -GCCuGUu-UGCc--------AGCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 81170 0.73 0.68162
Target:  5'- aCGGAU---CGGgCGUCGGGuCGGCGGCg -3'
miRNA:   3'- -GCCUGuuuGCCaGCAGCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 83953 0.69 0.87065
Target:  5'- uCGGA--GGCGGgcgCGUCGaGGCAGCaGGCc -3'
miRNA:   3'- -GCCUguUUGCCa--GCAGC-CUGUCG-CUG- -5'
7646 5' -54.5 NC_001973.1 + 86872 0.66 0.962077
Target:  5'- gCGG-CA--UGGUCGUCGuGaagcugcagcGCGGCGACg -3'
miRNA:   3'- -GCCuGUuuGCCAGCAGC-C----------UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 91539 0.75 0.550219
Target:  5'- uGGACGccGGCGGuUCGUCGG-CGGCGuCg -3'
miRNA:   3'- gCCUGU--UUGCC-AGCAGCCuGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 95072 0.66 0.963432
Target:  5'- gCGGGCAgcuucgaggcgcugcAGCGcUCGUgcgCGGGCcGCGACg -3'
miRNA:   3'- -GCCUGU---------------UUGCcAGCA---GCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 96610 0.67 0.946151
Target:  5'- gCGGACGcgcACGGcuaccugUCG-CGGcCGGCGGCg -3'
miRNA:   3'- -GCCUGUu--UGCC-------AGCaGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 96885 0.69 0.880679
Target:  5'- gCGGAUcugugcgcGGCGGgcgCGUCGGAucguucucggccguuCGGCGACa -3'
miRNA:   3'- -GCCUGu-------UUGCCa--GCAGCCU---------------GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 97978 0.81 0.274494
Target:  5'- aCGGGCAcgacGCGGUCG-CGGuCGGCGACg -3'
miRNA:   3'- -GCCUGUu---UGCCAGCaGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 100195 0.79 0.352688
Target:  5'- aGGGCGAGCaacucGGcuUUGUCGGGCGGCGGCa -3'
miRNA:   3'- gCCUGUUUG-----CC--AGCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 101195 0.67 0.942143
Target:  5'- cCGGGCGAAauUGGcgCG-CGGGCGGCG-Cu -3'
miRNA:   3'- -GCCUGUUU--GCCa-GCaGCCUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 101948 0.69 0.863231
Target:  5'- uCGGugAcGACGaUCGUgGuGGCGGCGACg -3'
miRNA:   3'- -GCCugU-UUGCcAGCAgC-CUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 102865 0.73 0.661404
Target:  5'- aGGACGAGCGaGacauucacaaauUgGUCGGACAGCGcGCg -3'
miRNA:   3'- gCCUGUUUGC-C------------AgCAGCCUGUCGC-UG- -5'
7646 5' -54.5 NC_001973.1 + 104144 0.68 0.914102
Target:  5'- aGGACGAgcacgagGCGGUgGaUCGGGCcggccgaaaacgcaAGCGGCc -3'
miRNA:   3'- gCCUGUU-------UGCCAgC-AGCCUG--------------UCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.