miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 153506 0.77 0.436406
Target:  5'- aGGGCuccGACagcucGUCGUCGGACAGCGAa -3'
miRNA:   3'- gCCUGu--UUGc----CAGCAGCCUGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 153460 1.09 0.005204
Target:  5'- uCGGACAAACGGUCGUCGGACAGCGACc -3'
miRNA:   3'- -GCCUGUUUGCCAGCAGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 152380 0.7 0.847784
Target:  5'- cCGGACGGcCGGcgCGggCGGGCgcggGGCGGCg -3'
miRNA:   3'- -GCCUGUUuGCCa-GCa-GCCUG----UCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 152331 0.66 0.962077
Target:  5'- uGGAC--GCGGUgCG-CGGGCGG-GGCg -3'
miRNA:   3'- gCCUGuuUGCCA-GCaGCCUGUCgCUG- -5'
7646 5' -54.5 NC_001973.1 + 151888 0.66 0.965401
Target:  5'- aGGACGuACGGcUCGuucUCGGGCcGCG-Cg -3'
miRNA:   3'- gCCUGUuUGCC-AGC---AGCCUGuCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 147010 0.71 0.760163
Target:  5'- uCGGACGAGggcacgaacCGGUUGUUGGGCAGguuguaaccCGGCa -3'
miRNA:   3'- -GCCUGUUU---------GCCAGCAGCCUGUC---------GCUG- -5'
7646 5' -54.5 NC_001973.1 + 146507 0.68 0.922032
Target:  5'- -uGGCccGCGGgaUCGUCGGGCAGCa-- -3'
miRNA:   3'- gcCUGuuUGCC--AGCAGCCUGUCGcug -5'
7646 5' -54.5 NC_001973.1 + 146085 0.77 0.436406
Target:  5'- uCGGGCGGGCGGggacuaagGUCGGGCcGCGGCg -3'
miRNA:   3'- -GCCUGUUUGCCag------CAGCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 146041 0.69 0.863231
Target:  5'- aCGGACgGGGCGaGUCuaagGUUGGGCcGCGGCg -3'
miRNA:   3'- -GCCUG-UUUGC-CAG----CAGCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 144448 0.73 0.691672
Target:  5'- aGGACGcGCGcGU-GUCGGGCGGCGuGCg -3'
miRNA:   3'- gCCUGUuUGC-CAgCAGCCUGUCGC-UG- -5'
7646 5' -54.5 NC_001973.1 + 144339 0.66 0.965401
Target:  5'- cCGGGCAAGCGGaugCGcgaGGACgAG-GACg -3'
miRNA:   3'- -GCCUGUUUGCCa--GCag-CCUG-UCgCUG- -5'
7646 5' -54.5 NC_001973.1 + 137822 0.7 0.831564
Target:  5'- uCGGGCA---GGUCGUCGcGCGGCGcCg -3'
miRNA:   3'- -GCCUGUuugCCAGCAGCcUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 134788 0.67 0.937468
Target:  5'- cCGGuCGAuGCGGcCGUCGGcgugguGCcGCGACa -3'
miRNA:   3'- -GCCuGUU-UGCCaGCAGCC------UGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 132459 0.69 0.87065
Target:  5'- gGGGC--GCGGccUCGUCGGGCucgccGCGAUc -3'
miRNA:   3'- gCCUGuuUGCC--AGCAGCCUGu----CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 123428 0.66 0.954779
Target:  5'- cCGGuGCAcGCGGUCGUC----AGCGGCa -3'
miRNA:   3'- -GCC-UGUuUGCCAGCAGccugUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 123079 0.66 0.954779
Target:  5'- cCGGGCGAGCaGcUCGcccgacaGGuACAGCGGCa -3'
miRNA:   3'- -GCCUGUUUGcC-AGCag-----CC-UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 121567 0.7 0.847784
Target:  5'- uGGugGAACacguacUCGUCGGucGCGGCGACc -3'
miRNA:   3'- gCCugUUUGcc----AGCAGCC--UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 121341 0.71 0.769572
Target:  5'- -cGACAGGCGGUCG-CGGuCGugcGCGACc -3'
miRNA:   3'- gcCUGUUUGCCAGCaGCCuGU---CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 111756 0.68 0.898161
Target:  5'- aCGGACGAccugcGCGG-CGUCaGAUcuGCGGCa -3'
miRNA:   3'- -GCCUGUU-----UGCCaGCAGcCUGu-CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 110345 0.83 0.215503
Target:  5'- uGGACGcguucgccgccucGGCGGccgCGUCGGACGGCGGCa -3'
miRNA:   3'- gCCUGU-------------UUGCCa--GCAGCCUGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.