miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7646 5' -54.5 NC_001973.1 + 55412 0.67 0.942143
Target:  5'- -cGAaaacGACGGuuUCGUCGG-CGGCGGCg -3'
miRNA:   3'- gcCUgu--UUGCC--AGCAGCCuGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 101195 0.67 0.942143
Target:  5'- cCGGGCGAAauUGGcgCG-CGGGCGGCG-Cu -3'
miRNA:   3'- -GCCUGUUU--GCCa-GCaGCCUGUCGCuG- -5'
7646 5' -54.5 NC_001973.1 + 9761 0.67 0.937468
Target:  5'- aCGGAUAGGCGaUCGUUuuAUAGCGGCc -3'
miRNA:   3'- -GCCUGUUUGCcAGCAGccUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 28202 0.67 0.937468
Target:  5'- uGGAgcaAAACGaGUCGgccacccCGGAgCGGCGACa -3'
miRNA:   3'- gCCUg--UUUGC-CAGCa------GCCU-GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44467 0.67 0.937468
Target:  5'- gGGAuCGAACGGgcgcUCGggcgCGGGCAuCGGCg -3'
miRNA:   3'- gCCU-GUUUGCC----AGCa---GCCUGUcGCUG- -5'
7646 5' -54.5 NC_001973.1 + 134788 0.67 0.937468
Target:  5'- cCGGuCGAuGCGGcCGUCGGcgugguGCcGCGACa -3'
miRNA:   3'- -GCCuGUU-UGCCaGCAGCC------UGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 146507 0.68 0.922032
Target:  5'- -uGGCccGCGGgaUCGUCGGGCAGCa-- -3'
miRNA:   3'- gcCUGuuUGCC--AGCAGCCUGUCGcug -5'
7646 5' -54.5 NC_001973.1 + 50087 0.68 0.922032
Target:  5'- gGGGC-GGCGG-CGccaCGGAgGGCGGCg -3'
miRNA:   3'- gCCUGuUUGCCaGCa--GCCUgUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 104144 0.68 0.914102
Target:  5'- aGGACGAgcacgagGCGGUgGaUCGGGCcggccgaaaacgcaAGCGGCc -3'
miRNA:   3'- gCCUGUU-------UGCCAgC-AGCCUG--------------UCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 111756 0.68 0.898161
Target:  5'- aCGGACGAccugcGCGG-CGUCaGAUcuGCGGCa -3'
miRNA:   3'- -GCCUGUU-----UGCCaGCAGcCUGu-CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 75522 0.68 0.898161
Target:  5'- aCGGAgAuuCGaaCG-CGGACAGCGGCu -3'
miRNA:   3'- -GCCUgUuuGCcaGCaGCCUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 44891 0.69 0.884847
Target:  5'- aCGGAgGuGCGGUCGUUGGGucCAugugcGUGACg -3'
miRNA:   3'- -GCCUgUuUGCCAGCAGCCU--GU-----CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 96885 0.69 0.880679
Target:  5'- gCGGAUcugugcgcGGCGGgcgCGUCGGAucguucucggccguuCGGCGACa -3'
miRNA:   3'- -GCCUGu-------UUGCCa--GCAGCCU---------------GUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 83953 0.69 0.87065
Target:  5'- uCGGA--GGCGGgcgCGUCGaGGCAGCaGGCc -3'
miRNA:   3'- -GCCUguUUGCCa--GCAGC-CUGUCG-CUG- -5'
7646 5' -54.5 NC_001973.1 + 132459 0.69 0.87065
Target:  5'- gGGGC--GCGGccUCGUCGGGCucgccGCGAUc -3'
miRNA:   3'- gCCUGuuUGCC--AGCAGCCUGu----CGCUG- -5'
7646 5' -54.5 NC_001973.1 + 9657 0.69 0.863231
Target:  5'- gCGGuACAGcCGGUCGcaguuguugcccUCGGcgaACGGCGGCg -3'
miRNA:   3'- -GCC-UGUUuGCCAGC------------AGCC---UGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 101948 0.69 0.863231
Target:  5'- uCGGugAcGACGaUCGUgGuGGCGGCGACg -3'
miRNA:   3'- -GCCugU-UUGCcAGCAgC-CUGUCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 146041 0.69 0.863231
Target:  5'- aCGGACgGGGCGaGUCuaagGUUGGGCcGCGGCg -3'
miRNA:   3'- -GCCUG-UUUGC-CAG----CAGCCUGuCGCUG- -5'
7646 5' -54.5 NC_001973.1 + 55225 0.69 0.855607
Target:  5'- gCGGAgGcGGCGG-CGgCGGGCGGCGAg -3'
miRNA:   3'- -GCCUgU-UUGCCaGCaGCCUGUCGCUg -5'
7646 5' -54.5 NC_001973.1 + 38489 0.69 0.855607
Target:  5'- aCGGACAGGuCGGcgCG-CGGAUucgcggugaGGCGGCa -3'
miRNA:   3'- -GCCUGUUU-GCCa-GCaGCCUG---------UCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.