Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 108878 | 0.68 | 0.831196 |
Target: 5'- gACUCCGugagaucgcucACCgCGUACAGGuCGUcgcuuuUGGCg -3' miRNA: 3'- -UGAGGC-----------UGG-GCAUGUCCuGCAu-----GCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 57922 | 0.68 | 0.839311 |
Target: 5'- cGCUCCuGGuCgCCGUACAcGACGUgggcgACGGCc -3' miRNA: 3'- -UGAGG-CU-G-GGCAUGUcCUGCA-----UGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 152383 | 0.68 | 0.839311 |
Target: 5'- gACggCCGGCgCGgGCGGGcGCGggGCGGCg -3' miRNA: 3'- -UGa-GGCUGgGCaUGUCC-UGCa-UGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 48448 | 0.68 | 0.847244 |
Target: 5'- aAUUCCGcuCCCGUcCAGGGCcauuucuaUGCGGCc -3' miRNA: 3'- -UGAGGCu-GGGCAuGUCCUGc-------AUGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 18512 | 0.68 | 0.869889 |
Target: 5'- cGCUCCG--UCGUAUAuauaacGGGCGUACGGg -3' miRNA: 3'- -UGAGGCugGGCAUGU------CCUGCAUGCCg -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 46481 | 0.68 | 0.869889 |
Target: 5'- cCUCCGucgccgucGCCCGcGC-GGACGgccuCGGCg -3' miRNA: 3'- uGAGGC--------UGGGCaUGuCCUGCau--GCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 31575 | 0.69 | 0.814451 |
Target: 5'- -gUCCGcCUCGUAgUAGGccACGUugGGCg -3' miRNA: 3'- ugAGGCuGGGCAU-GUCC--UGCAugCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 62476 | 0.7 | 0.732143 |
Target: 5'- gGCUgCGugCUgGUGCuguGGuCGUACGGCa -3' miRNA: 3'- -UGAgGCugGG-CAUGu--CCuGCAUGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 46103 | 0.7 | 0.741738 |
Target: 5'- uACggCCGcguGCCCGcGCuGGACGcGCGGCu -3' miRNA: 3'- -UGa-GGC---UGGGCaUGuCCUGCaUGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 62397 | 0.7 | 0.751241 |
Target: 5'- cACUCUGAUcaCCGaggaGCGcGACGUGCGGCu -3' miRNA: 3'- -UGAGGCUG--GGCa---UGUcCUGCAUGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 29951 | 0.71 | 0.722464 |
Target: 5'- cGCcUCGAgCCCGUACAGaGACGc-CGGCu -3' miRNA: 3'- -UGaGGCU-GGGCAUGUC-CUGCauGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 91415 | 0.71 | 0.683088 |
Target: 5'- uACUUCaugCCGUACAuGACGUGCGGCc -3' miRNA: 3'- -UGAGGcugGGCAUGUcCUGCAUGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 6961 | 0.72 | 0.652096 |
Target: 5'- cCUCCGgcugcucGCCCGaACAGGGCcgccGCGGCa -3' miRNA: 3'- uGAGGC-------UGGGCaUGUCCUGca--UGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 3593 | 0.75 | 0.476649 |
Target: 5'- cGCUUCGGCUCGUACAGcACGUccacgcgcGCGGUg -3' miRNA: 3'- -UGAGGCUGGGCAUGUCcUGCA--------UGCCG- -5' |
|||||||
7647 | 3' | -56.1 | NC_001973.1 | + | 151873 | 1.11 | 0.002668 |
Target: 5'- aACUCCGACCCGUACAGGACGUACGGCu -3' miRNA: 3'- -UGAGGCUGGGCAUGUCCUGCAUGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home