miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 3' -56.1 NC_001973.1 + 46481 0.68 0.869889
Target:  5'- cCUCCGucgccgucGCCCGcGC-GGACGgccuCGGCg -3'
miRNA:   3'- uGAGGC--------UGGGCaUGuCCUGCau--GCCG- -5'
7647 3' -56.1 NC_001973.1 + 18512 0.68 0.869889
Target:  5'- cGCUCCG--UCGUAUAuauaacGGGCGUACGGg -3'
miRNA:   3'- -UGAGGCugGGCAUGU------CCUGCAUGCCg -5'
7647 3' -56.1 NC_001973.1 + 48448 0.68 0.847244
Target:  5'- aAUUCCGcuCCCGUcCAGGGCcauuucuaUGCGGCc -3'
miRNA:   3'- -UGAGGCu-GGGCAuGUCCUGc-------AUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 152383 0.68 0.839311
Target:  5'- gACggCCGGCgCGgGCGGGcGCGggGCGGCg -3'
miRNA:   3'- -UGa-GGCUGgGCaUGUCC-UGCa-UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 57922 0.68 0.839311
Target:  5'- cGCUCCuGGuCgCCGUACAcGACGUgggcgACGGCc -3'
miRNA:   3'- -UGAGG-CU-G-GGCAUGUcCUGCA-----UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 108878 0.68 0.831196
Target:  5'- gACUCCGugagaucgcucACCgCGUACAGGuCGUcgcuuuUGGCg -3'
miRNA:   3'- -UGAGGC-----------UGG-GCAUGUCCuGCAu-----GCCG- -5'
7647 3' -56.1 NC_001973.1 + 31575 0.69 0.814451
Target:  5'- -gUCCGcCUCGUAgUAGGccACGUugGGCg -3'
miRNA:   3'- ugAGGCuGGGCAU-GUCC--UGCAugCCG- -5'
7647 3' -56.1 NC_001973.1 + 62397 0.7 0.751241
Target:  5'- cACUCUGAUcaCCGaggaGCGcGACGUGCGGCu -3'
miRNA:   3'- -UGAGGCUG--GGCa---UGUcCUGCAUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 46103 0.7 0.741738
Target:  5'- uACggCCGcguGCCCGcGCuGGACGcGCGGCu -3'
miRNA:   3'- -UGa-GGC---UGGGCaUGuCCUGCaUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 62476 0.7 0.732143
Target:  5'- gGCUgCGugCUgGUGCuguGGuCGUACGGCa -3'
miRNA:   3'- -UGAgGCugGG-CAUGu--CCuGCAUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 29951 0.71 0.722464
Target:  5'- cGCcUCGAgCCCGUACAGaGACGc-CGGCu -3'
miRNA:   3'- -UGaGGCU-GGGCAUGUC-CUGCauGCCG- -5'
7647 3' -56.1 NC_001973.1 + 91415 0.71 0.683088
Target:  5'- uACUUCaugCCGUACAuGACGUGCGGCc -3'
miRNA:   3'- -UGAGGcugGGCAUGUcCUGCAUGCCG- -5'
7647 3' -56.1 NC_001973.1 + 6961 0.72 0.652096
Target:  5'- cCUCCGgcugcucGCCCGaACAGGGCcgccGCGGCa -3'
miRNA:   3'- uGAGGC-------UGGGCaUGUCCUGca--UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 3593 0.75 0.476649
Target:  5'- cGCUUCGGCUCGUACAGcACGUccacgcgcGCGGUg -3'
miRNA:   3'- -UGAGGCUGGGCAUGUCcUGCA--------UGCCG- -5'
7647 3' -56.1 NC_001973.1 + 151873 1.11 0.002668
Target:  5'- aACUCCGACCCGUACAGGACGUACGGCu -3'
miRNA:   3'- -UGAGGCUGGGCAUGUCCUGCAUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.