miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 97996 0.68 0.592818
Target:  5'- cGGUCgGCGaCGUCCacgcgcuccgUCUCCAgcauGCCGGUg -3'
miRNA:   3'- cCCGG-CGC-GCAGGa---------AGAGGU----CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 136551 0.68 0.592818
Target:  5'- aGG-UGUGCGUCUUUCgaaagUCCAGCaUGGCg -3'
miRNA:   3'- cCCgGCGCGCAGGAAG-----AGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 61327 0.68 0.587018
Target:  5'- -cGCCgGCGCGcagcUgCUUCUCCGccaccgcguagucguGCCGGCa -3'
miRNA:   3'- ccCGG-CGCGC----AgGAAGAGGU---------------CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86588 0.68 0.583157
Target:  5'- cGGaGCuCGCGCGcgccggCCUUUUCUAcaCCGGCg -3'
miRNA:   3'- -CC-CG-GCGCGCa-----GGAAGAGGUc-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 20928 0.68 0.554385
Target:  5'- -aGCCGauuGCGUUCUg-UCgAGCCGGCg -3'
miRNA:   3'- ccCGGCg--CGCAGGAagAGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 95106 0.68 0.544884
Target:  5'- cGGGCCGCGacgaCUUCa--AGCUGGCg -3'
miRNA:   3'- -CCCGGCGCgcagGAAGaggUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 104243 0.68 0.544884
Target:  5'- -cGCUGCGCGUCCg---UCAGCuguuCGGCg -3'
miRNA:   3'- ccCGGCGCGCAGGaagaGGUCG----GCCG- -5'
7647 5' -61.9 NC_001973.1 + 109411 0.68 0.535436
Target:  5'- aGGcGCCgGCGCGUCgUccaagUCgagCAGCCGGUa -3'
miRNA:   3'- -CC-CGG-CGCGCAGgA-----AGag-GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 84308 0.68 0.532613
Target:  5'- cGGCCGCGUccgccgcccaggacGUCag-CUaCGGCCGGCu -3'
miRNA:   3'- cCCGGCGCG--------------CAGgaaGAgGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 126817 0.69 0.516719
Target:  5'- -cGCCGCuaGUGUCCaUUUUaaCGGCCGGCg -3'
miRNA:   3'- ccCGGCG--CGCAGGaAGAG--GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 80459 0.69 0.50746
Target:  5'- uGGCgGCG-GUCCggCgCCAGCuCGGCc -3'
miRNA:   3'- cCCGgCGCgCAGGaaGaGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 134380 0.69 0.506537
Target:  5'- cGGCCGauuauucCGCcUCCUuaUCgagagcggCCGGCCGGCg -3'
miRNA:   3'- cCCGGC-------GCGcAGGA--AGa-------GGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 124514 0.69 0.501937
Target:  5'- uGGCCGaCGCGUUCaa-UCCGuacaagaaggaucgcGCCGGCu -3'
miRNA:   3'- cCCGGC-GCGCAGGaagAGGU---------------CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 41400 0.69 0.489157
Target:  5'- aGGGCgucuauguCGCGCG-CCgcCUCCGcGUCGGCc -3'
miRNA:   3'- -CCCG--------GCGCGCaGGaaGAGGU-CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 154207 0.7 0.465839
Target:  5'- cGGGCUGCGacaggcccaaGUCCUcuuccgccgUCUCCGGCaagccuaaacccgaGGCa -3'
miRNA:   3'- -CCCGGCGCg---------CAGGA---------AGAGGUCGg-------------CCG- -5'
7647 5' -61.9 NC_001973.1 + 86746 0.7 0.444837
Target:  5'- cGGCgGCGCGcggCCUcgUUCCgcgccuucaaGGCCGGCu -3'
miRNA:   3'- cCCGgCGCGCa--GGAa-GAGG----------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 23683 0.7 0.436244
Target:  5'- cGGGCCuccGCGCGUCgacgCgCCAGCUGcGCg -3'
miRNA:   3'- -CCCGG---CGCGCAGgaa-GaGGUCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 129636 0.7 0.436244
Target:  5'- cGGUgGCgGCGUCCUcgCaUCGGCCGGUg -3'
miRNA:   3'- cCCGgCG-CGCAGGAa-GaGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 77369 0.7 0.427747
Target:  5'- cGGCCGCGCGcCCgcgc---GCCGGCg -3'
miRNA:   3'- cCCGGCGCGCaGGaagagguCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 133950 0.71 0.418515
Target:  5'- cGGGCUGgGCGUacucgacggCCgUCUCCgacgucuggguguAGCCGGUg -3'
miRNA:   3'- -CCCGGCgCGCA---------GGaAGAGG-------------UCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.