miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 109197 0.66 0.660822
Target:  5'- -cGCCGCGCaG-CCggC-CCAGCuCGGCc -3'
miRNA:   3'- ccCGGCGCG-CaGGaaGaGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 139066 0.67 0.651113
Target:  5'- -uGCCguucgaGCGCGUCCcucUUCUCCugguggucGUCGGCg -3'
miRNA:   3'- ccCGG------CGCGCAGG---AAGAGGu-------CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 101437 0.67 0.651113
Target:  5'- -cGCCGuCGCaGUCCgugUUCgAGCCGGg -3'
miRNA:   3'- ccCGGC-GCG-CAGGaa-GAGgUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 30364 0.67 0.651113
Target:  5'- cGGGCCgccgGCGCGgcgaC-UCgggugCgGGCCGGCg -3'
miRNA:   3'- -CCCGG----CGCGCag--GaAGa----GgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 4130 0.67 0.651113
Target:  5'- cGGCCGCGUucGaCCa---CCAGUCGGCg -3'
miRNA:   3'- cCCGGCGCG--CaGGaagaGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 125436 0.67 0.650142
Target:  5'- cGGGCCGC-CGUCCacaaccgacugauUUCgaUCgAGCUGGa -3'
miRNA:   3'- -CCCGGCGcGCAGG-------------AAG--AGgUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 133463 0.67 0.642364
Target:  5'- cGGGUCGCGCacggagcgCCAGCgGGCg -3'
miRNA:   3'- -CCCGGCGCGcaggaagaGGUCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 109312 0.67 0.641391
Target:  5'- gGGGUCgaggaGCGCGUCgCgcgCgaaccggaaCAGCCGGCg -3'
miRNA:   3'- -CCCGG-----CGCGCAG-Gaa-Gag-------GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 22580 0.67 0.640419
Target:  5'- gGGGUuuUGCGCGaUCCgcgagUCgaacgcgUCgGGCCGGCc -3'
miRNA:   3'- -CCCG--GCGCGC-AGGa----AG-------AGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 61095 0.67 0.631663
Target:  5'- aGGCCGCGCGgCCgaCggagCAGCggCGGCg -3'
miRNA:   3'- cCCGGCGCGCaGGaaGag--GUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 6510 0.67 0.621935
Target:  5'- uGGGCgGCGCGggcgugCCgacgaUUUUgCGGCUGGUg -3'
miRNA:   3'- -CCCGgCGCGCa-----GG-----AAGAgGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 155107 0.67 0.621935
Target:  5'- -aGCCGC-CGUCgCUUCUaucaCGGgCGGCg -3'
miRNA:   3'- ccCGGCGcGCAG-GAAGAg---GUCgGCCG- -5'
7647 5' -61.9 NC_001973.1 + 3921 0.67 0.621935
Target:  5'- cGGG-CGCGaaCGUCg-UCUCCAGgCCGGg -3'
miRNA:   3'- -CCCgGCGC--GCAGgaAGAGGUC-GGCCg -5'
7647 5' -61.9 NC_001973.1 + 146107 0.67 0.612214
Target:  5'- cGGGCCGCgGCGcugagCCggCUCgggAGCgGGCc -3'
miRNA:   3'- -CCCGGCG-CGCa----GGaaGAGg--UCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 19695 0.67 0.612214
Target:  5'- cGGCCgGCGCGuaaaaUCCUaCgcgUCGGCCGGa -3'
miRNA:   3'- cCCGG-CGCGC-----AGGAaGa--GGUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 99023 0.67 0.612214
Target:  5'- uGGGCCGCGacaCGUUCg---CCcGCCGGg -3'
miRNA:   3'- -CCCGGCGC---GCAGGaagaGGuCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 157257 0.67 0.602506
Target:  5'- cGGCCGCgGCGUguuuguuuaUCUUCUCCGGCg--- -3'
miRNA:   3'- cCCGGCG-CGCA---------GGAAGAGGUCGgccg -5'
7647 5' -61.9 NC_001973.1 + 62938 0.67 0.602506
Target:  5'- cGGGCCG-GCGUCgucaguagaCUUgCgcgagCCcGCCGGCg -3'
miRNA:   3'- -CCCGGCgCGCAG---------GAA-Ga----GGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 97996 0.68 0.592818
Target:  5'- cGGUCgGCGaCGUCCacgcgcuccgUCUCCAgcauGCCGGUg -3'
miRNA:   3'- cCCGG-CGC-GCAGGa---------AGAGGU----CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 59893 0.68 0.592818
Target:  5'- cGGCgGCGCGgugucggCCaacgCgagCCAGCCGcGCg -3'
miRNA:   3'- cCCGgCGCGCa------GGaa--Ga--GGUCGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.