Results 21 - 40 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 86746 | 0.7 | 0.444837 |
Target: 5'- cGGCgGCGCGcggCCUcgUUCCgcgccuucaaGGCCGGCu -3' miRNA: 3'- cCCGgCGCGCa--GGAa-GAGG----------UCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 154207 | 0.7 | 0.465839 |
Target: 5'- cGGGCUGCGacaggcccaaGUCCUcuuccgccgUCUCCGGCaagccuaaacccgaGGCa -3' miRNA: 3'- -CCCGGCGCg---------CAGGA---------AGAGGUCGg-------------CCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 41400 | 0.69 | 0.489157 |
Target: 5'- aGGGCgucuauguCGCGCG-CCgcCUCCGcGUCGGCc -3' miRNA: 3'- -CCCG--------GCGCGCaGGaaGAGGU-CGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 124514 | 0.69 | 0.501937 |
Target: 5'- uGGCCGaCGCGUUCaa-UCCGuacaagaaggaucgcGCCGGCu -3' miRNA: 3'- cCCGGC-GCGCAGGaagAGGU---------------CGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 134380 | 0.69 | 0.506537 |
Target: 5'- cGGCCGauuauucCGCcUCCUuaUCgagagcggCCGGCCGGCg -3' miRNA: 3'- cCCGGC-------GCGcAGGA--AGa-------GGUCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 80459 | 0.69 | 0.50746 |
Target: 5'- uGGCgGCG-GUCCggCgCCAGCuCGGCc -3' miRNA: 3'- cCCGgCGCgCAGGaaGaGGUCG-GCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 126817 | 0.69 | 0.516719 |
Target: 5'- -cGCCGCuaGUGUCCaUUUUaaCGGCCGGCg -3' miRNA: 3'- ccCGGCG--CGCAGGaAGAG--GUCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 84308 | 0.68 | 0.532613 |
Target: 5'- cGGCCGCGUccgccgcccaggacGUCag-CUaCGGCCGGCu -3' miRNA: 3'- cCCGGCGCG--------------CAGgaaGAgGUCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 109411 | 0.68 | 0.535436 |
Target: 5'- aGGcGCCgGCGCGUCgUccaagUCgagCAGCCGGUa -3' miRNA: 3'- -CC-CGG-CGCGCAGgA-----AGag-GUCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 95106 | 0.68 | 0.544884 |
Target: 5'- cGGGCCGCGacgaCUUCa--AGCUGGCg -3' miRNA: 3'- -CCCGGCGCgcagGAAGaggUCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 104243 | 0.68 | 0.544884 |
Target: 5'- -cGCUGCGCGUCCg---UCAGCuguuCGGCg -3' miRNA: 3'- ccCGGCGCGCAGGaagaGGUCG----GCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 20928 | 0.68 | 0.554385 |
Target: 5'- -aGCCGauuGCGUUCUg-UCgAGCCGGCg -3' miRNA: 3'- ccCGGCg--CGCAGGAagAGgUCGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 86588 | 0.68 | 0.583157 |
Target: 5'- cGGaGCuCGCGCGcgccggCCUUUUCUAcaCCGGCg -3' miRNA: 3'- -CC-CG-GCGCGCa-----GGAAGAGGUc-GGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 61327 | 0.68 | 0.587018 |
Target: 5'- -cGCCgGCGCGcagcUgCUUCUCCGccaccgcguagucguGCCGGCa -3' miRNA: 3'- ccCGG-CGCGC----AgGAAGAGGU---------------CGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 14661 | 0.68 | 0.592818 |
Target: 5'- cGGCCGCuCGUCCgcccgCCGcCCGGUg -3' miRNA: 3'- cCCGGCGcGCAGGaaga-GGUcGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 59893 | 0.68 | 0.592818 |
Target: 5'- cGGCgGCGCGgugucggCCaacgCgagCCAGCCGcGCg -3' miRNA: 3'- cCCGgCGCGCa------GGaa--Ga--GGUCGGC-CG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 136551 | 0.68 | 0.592818 |
Target: 5'- aGG-UGUGCGUCUUUCgaaagUCCAGCaUGGCg -3' miRNA: 3'- cCCgGCGCGCAGGAAG-----AGGUCG-GCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 97996 | 0.68 | 0.592818 |
Target: 5'- cGGUCgGCGaCGUCCacgcgcuccgUCUCCAgcauGCCGGUg -3' miRNA: 3'- cCCGG-CGC-GCAGGa---------AGAGGU----CGGCCG- -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 157257 | 0.67 | 0.602506 |
Target: 5'- cGGCCGCgGCGUguuuguuuaUCUUCUCCGGCg--- -3' miRNA: 3'- cCCGGCG-CGCA---------GGAAGAGGUCGgccg -5' |
|||||||
7647 | 5' | -61.9 | NC_001973.1 | + | 62938 | 0.67 | 0.602506 |
Target: 5'- cGGGCCG-GCGUCgucaguagaCUUgCgcgagCCcGCCGGCg -3' miRNA: 3'- -CCCGGCgCGCAG---------GAA-Ga----GGuCGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home