miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 151907 1.13 0.000505
Target:  5'- cGGGCCGCGCGUCCUUCUCCAGCCGGCg -3'
miRNA:   3'- -CCCGGCGCGCAGGAAGAGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 111471 0.82 0.081821
Target:  5'- aGGCCGCGCGUCaagUUCgucgCCGcGCCGGCg -3'
miRNA:   3'- cCCGGCGCGCAGg--AAGa---GGU-CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 52851 0.82 0.086068
Target:  5'- cGGCCGCGCGcggCCggUCggUCCAGCUGGCg -3'
miRNA:   3'- cCCGGCGCGCa--GGa-AG--AGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 138993 0.79 0.119203
Target:  5'- -cGCCGcCGCGUCCgaCUCC-GCCGGCg -3'
miRNA:   3'- ccCGGC-GCGCAGGaaGAGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86816 0.78 0.145156
Target:  5'- uGGCCGCGUgcgGUUCUUCUacaaCGGCCGGUg -3'
miRNA:   3'- cCCGGCGCG---CAGGAAGAg---GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 59013 0.78 0.148741
Target:  5'- cGGcGCCGaCGUGUUCUUUUCCGGCgaCGGCa -3'
miRNA:   3'- -CC-CGGC-GCGCAGGAAGAGGUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 81638 0.77 0.167903
Target:  5'- uGGUCGCGCGcgCCg-CUUCGGCCGGCc -3'
miRNA:   3'- cCCGGCGCGCa-GGaaGAGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 31978 0.77 0.17617
Target:  5'- cGGGCUGCGCG-CCgaUCUCC-GCCGcGCu -3'
miRNA:   3'- -CCCGGCGCGCaGGa-AGAGGuCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 81803 0.75 0.217976
Target:  5'- cGGCCGCgGUGUCCggCgCC-GCCGGCg -3'
miRNA:   3'- cCCGGCG-CGCAGGaaGaGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 87075 0.75 0.233693
Target:  5'- cGGCCGCGCaacgugugCUUUCUgCCGuGCCGGCa -3'
miRNA:   3'- cCCGGCGCGca------GGAAGA-GGU-CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 146063 0.75 0.244693
Target:  5'- uGGGCCGCgGCGccgagCCggCUCgGGCgGGCg -3'
miRNA:   3'- -CCCGGCG-CGCa----GGaaGAGgUCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 94720 0.73 0.315715
Target:  5'- uGGGCgaggcggccggcaagCGCGCGUCCgugugcgUCUCgAGCggCGGCa -3'
miRNA:   3'- -CCCG---------------GCGCGCAGGa------AGAGgUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 95318 0.73 0.326844
Target:  5'- -cGCCGCGCGUUCg--UCgAGUCGGCg -3'
miRNA:   3'- ccCGGCGCGCAGGaagAGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 136458 0.72 0.338262
Target:  5'- aGGGCCGCGCGaaguaggCCacguAGCCGGCg -3'
miRNA:   3'- -CCCGGCGCGCaggaagaGG----UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 71757 0.71 0.411052
Target:  5'- cGGCCGCGcCGggccccgccgCCgagCUCgaGGCCGGCg -3'
miRNA:   3'- cCCGGCGC-GCa---------GGaa-GAGg-UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 45223 0.71 0.414358
Target:  5'- cGGGCCGCGUGcugccggcccgccaCCUggcucauguUCUgCgGGCCGGCa -3'
miRNA:   3'- -CCCGGCGCGCa-------------GGA---------AGA-GgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 133950 0.71 0.418515
Target:  5'- cGGGCUGgGCGUacucgacggCCgUCUCCgacgucuggguguAGCCGGUg -3'
miRNA:   3'- -CCCGGCgCGCA---------GGaAGAGG-------------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 77369 0.7 0.427747
Target:  5'- cGGCCGCGCGcCCgcgc---GCCGGCg -3'
miRNA:   3'- cCCGGCGCGCaGGaagagguCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 23683 0.7 0.436244
Target:  5'- cGGGCCuccGCGCGUCgacgCgCCAGCUGcGCg -3'
miRNA:   3'- -CCCGG---CGCGCAGgaa-GaGGUCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 129636 0.7 0.436244
Target:  5'- cGGUgGCgGCGUCCUcgCaUCGGCCGGUg -3'
miRNA:   3'- cCCGgCG-CGCAGGAa-GaGGUCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.