miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 2689 0.66 0.689792
Target:  5'- cGGCCGaCGCGUaaaaUCUUaCgcgUCGGCCGGg -3'
miRNA:   3'- cCCGGC-GCGCA----GGAA-Ga--GGUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 3921 0.67 0.621935
Target:  5'- cGGG-CGCGaaCGUCg-UCUCCAGgCCGGg -3'
miRNA:   3'- -CCCgGCGC--GCAGgaAGAGGUC-GGCCg -5'
7647 5' -61.9 NC_001973.1 + 4130 0.67 0.651113
Target:  5'- cGGCCGCGUucGaCCa---CCAGUCGGCg -3'
miRNA:   3'- cCCGGCGCG--CaGGaagaGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 4751 0.66 0.680168
Target:  5'- cGGCCGUcaccaGUUCUUUgUCC-GCCGGCg -3'
miRNA:   3'- cCCGGCGcg---CAGGAAG-AGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 6510 0.67 0.621935
Target:  5'- uGGGCgGCGCGggcgugCCgacgaUUUUgCGGCUGGUg -3'
miRNA:   3'- -CCCGgCGCGCa-----GG-----AAGAgGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 7842 0.66 0.699372
Target:  5'- cGGGCgGCGCcgcgCCcg-UCgAGCUGGCg -3'
miRNA:   3'- -CCCGgCGCGca--GGaagAGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 8078 0.66 0.699372
Target:  5'- cGGCgCGCacGCGUUCccgCUgacggcgagcaCCGGCCGGCu -3'
miRNA:   3'- cCCG-GCG--CGCAGGaa-GA-----------GGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 9632 0.66 0.708901
Target:  5'- -cGCCGCugGCGUUCggCUCgagggcgcgguaCAGCCGGUc -3'
miRNA:   3'- ccCGGCG--CGCAGGaaGAG------------GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 14251 0.66 0.689792
Target:  5'- -cGCCGCGCGUCgaca-CCAGCaCGcGCg -3'
miRNA:   3'- ccCGGCGCGCAGgaagaGGUCG-GC-CG- -5'
7647 5' -61.9 NC_001973.1 + 14661 0.68 0.592818
Target:  5'- cGGCCGCuCGUCCgcccgCCGcCCGGUg -3'
miRNA:   3'- cCCGGCGcGCAGGaaga-GGUcGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 17516 0.66 0.708901
Target:  5'- cGGCCGCGCgGUCgUagucCUCgCAGUaagCGGCc -3'
miRNA:   3'- cCCGGCGCG-CAGgAa---GAG-GUCG---GCCG- -5'
7647 5' -61.9 NC_001973.1 + 19695 0.67 0.612214
Target:  5'- cGGCCgGCGCGuaaaaUCCUaCgcgUCGGCCGGa -3'
miRNA:   3'- cCCGG-CGCGC-----AGGAaGa--GGUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 20928 0.68 0.554385
Target:  5'- -aGCCGauuGCGUUCUg-UCgAGCCGGCg -3'
miRNA:   3'- ccCGGCg--CGCAGGAagAGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 22580 0.67 0.640419
Target:  5'- gGGGUuuUGCGCGaUCCgcgagUCgaacgcgUCgGGCCGGCc -3'
miRNA:   3'- -CCCG--GCGCGC-AGGa----AG-------AGgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 23250 0.66 0.699372
Target:  5'- -cGCCGCGUGUCgCUgC-CCcGCCGcGCg -3'
miRNA:   3'- ccCGGCGCGCAG-GAaGaGGuCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 23683 0.7 0.436244
Target:  5'- cGGGCCuccGCGCGUCgacgCgCCAGCUGcGCg -3'
miRNA:   3'- -CCCGG---CGCGCAGgaa-GaGGUCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 30364 0.67 0.651113
Target:  5'- cGGGCCgccgGCGCGgcgaC-UCgggugCgGGCCGGCg -3'
miRNA:   3'- -CCCGG----CGCGCag--GaAGa----GgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 31978 0.77 0.17617
Target:  5'- cGGGCUGCGCG-CCgaUCUCC-GCCGcGCu -3'
miRNA:   3'- -CCCGGCGCGCaGGa-AGAGGuCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 35370 0.66 0.688831
Target:  5'- cGGGCUacuuuuuGCGCG-CCgcgCUCCAcggcuaccgcGCCGcGCg -3'
miRNA:   3'- -CCCGG-------CGCGCaGGaa-GAGGU----------CGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 41400 0.69 0.489157
Target:  5'- aGGGCgucuauguCGCGCG-CCgcCUCCGcGUCGGCc -3'
miRNA:   3'- -CCCG--------GCGCGCaGGaaGAGGU-CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.