miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 160072 0.66 0.684022
Target:  5'- aGGCUGCGC-UCCUcgaUCUCguGCUguuccaagugcuuuuGGCg -3'
miRNA:   3'- cCCGGCGCGcAGGA---AGAGguCGG---------------CCG- -5'
7647 5' -61.9 NC_001973.1 + 157257 0.67 0.602506
Target:  5'- cGGCCGCgGCGUguuuguuuaUCUUCUCCGGCg--- -3'
miRNA:   3'- cCCGGCG-CGCA---------GGAAGAGGUCGgccg -5'
7647 5' -61.9 NC_001973.1 + 155107 0.67 0.621935
Target:  5'- -aGCCGC-CGUCgCUUCUaucaCGGgCGGCg -3'
miRNA:   3'- ccCGGCGcGCAG-GAAGAg---GUCgGCCG- -5'
7647 5' -61.9 NC_001973.1 + 154207 0.7 0.465839
Target:  5'- cGGGCUGCGacaggcccaaGUCCUcuuccgccgUCUCCGGCaagccuaaacccgaGGCa -3'
miRNA:   3'- -CCCGGCGCg---------CAGGA---------AGAGGUCGg-------------CCG- -5'
7647 5' -61.9 NC_001973.1 + 152361 0.66 0.680168
Target:  5'- -cGCCGCGCGaaugagcgagCCgga--CGGCCGGCg -3'
miRNA:   3'- ccCGGCGCGCa---------GGaagagGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 151907 1.13 0.000505
Target:  5'- cGGGCCGCGCGUCCUUCUCCAGCCGGCg -3'
miRNA:   3'- -CCCGGCGCGCAGGAAGAGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 146107 0.67 0.612214
Target:  5'- cGGGCCGCgGCGcugagCCggCUCgggAGCgGGCc -3'
miRNA:   3'- -CCCGGCG-CGCa----GGaaGAGg--UCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 146063 0.75 0.244693
Target:  5'- uGGGCCGCgGCGccgagCCggCUCgGGCgGGCg -3'
miRNA:   3'- -CCCGGCG-CGCa----GGaaGAGgUCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 139066 0.67 0.651113
Target:  5'- -uGCCguucgaGCGCGUCCcucUUCUCCugguggucGUCGGCg -3'
miRNA:   3'- ccCGG------CGCGCAGG---AAGAGGu-------CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 138993 0.79 0.119203
Target:  5'- -cGCCGcCGCGUCCgaCUCC-GCCGGCg -3'
miRNA:   3'- ccCGGC-GCGCAGGaaGAGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 136551 0.68 0.592818
Target:  5'- aGG-UGUGCGUCUUUCgaaagUCCAGCaUGGCg -3'
miRNA:   3'- cCCgGCGCGCAGGAAG-----AGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 136458 0.72 0.338262
Target:  5'- aGGGCCGCGCGaaguaggCCacguAGCCGGCg -3'
miRNA:   3'- -CCCGGCGCGCaggaagaGG----UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 134380 0.69 0.506537
Target:  5'- cGGCCGauuauucCGCcUCCUuaUCgagagcggCCGGCCGGCg -3'
miRNA:   3'- cCCGGC-------GCGcAGGA--AGa-------GGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 133950 0.71 0.418515
Target:  5'- cGGGCUGgGCGUacucgacggCCgUCUCCgacgucuggguguAGCCGGUg -3'
miRNA:   3'- -CCCGGCgCGCA---------GGaAGAGG-------------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 133463 0.67 0.642364
Target:  5'- cGGGUCGCGCacggagcgCCAGCgGGCg -3'
miRNA:   3'- -CCCGGCGCGcaggaagaGGUCGgCCG- -5'
7647 5' -61.9 NC_001973.1 + 132817 0.66 0.679204
Target:  5'- -uGUCGCGCGUCUcgC-CCauggacuggaaauAGCCGGCc -3'
miRNA:   3'- ccCGGCGCGCAGGaaGaGG-------------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 129636 0.7 0.436244
Target:  5'- cGGUgGCgGCGUCCUcgCaUCGGCCGGUg -3'
miRNA:   3'- cCCGgCG-CGCAGGAa-GaGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 126817 0.69 0.516719
Target:  5'- -cGCCGCuaGUGUCCaUUUUaaCGGCCGGCg -3'
miRNA:   3'- ccCGGCG--CGCAGGaAGAG--GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 125436 0.67 0.650142
Target:  5'- cGGGCCGC-CGUCCacaaccgacugauUUCgaUCgAGCUGGa -3'
miRNA:   3'- -CCCGGCGcGCAGG-------------AAG--AGgUCGGCCg -5'
7647 5' -61.9 NC_001973.1 + 124514 0.69 0.501937
Target:  5'- uGGCCGaCGCGUUCaa-UCCGuacaagaaggaucgcGCCGGCu -3'
miRNA:   3'- cCCGGC-GCGCAGGaagAGGU---------------CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.