miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7647 5' -61.9 NC_001973.1 + 45223 0.71 0.414358
Target:  5'- cGGGCCGCGUGcugccggcccgccaCCUggcucauguUCUgCgGGCCGGCa -3'
miRNA:   3'- -CCCGGCGCGCa-------------GGA---------AGA-GgUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 47749 0.66 0.680168
Target:  5'- cGGCCGCccgGCGgaaucacggccUCCUcggcgCUCCucagguccaGGCCGGCc -3'
miRNA:   3'- cCCGGCG---CGC-----------AGGAa----GAGG---------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 52851 0.82 0.086068
Target:  5'- cGGCCGCGCGcggCCggUCggUCCAGCUGGCg -3'
miRNA:   3'- cCCGGCGCGCa--GGa-AG--AGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 53628 0.66 0.689792
Target:  5'- cGGCgCGCGCGUgCgguaaUCCAGaUUGGCc -3'
miRNA:   3'- cCCG-GCGCGCAgGaag--AGGUC-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 59013 0.78 0.148741
Target:  5'- cGGcGCCGaCGUGUUCUUUUCCGGCgaCGGCa -3'
miRNA:   3'- -CC-CGGC-GCGCAGGAAGAGGUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 59893 0.68 0.592818
Target:  5'- cGGCgGCGCGgugucggCCaacgCgagCCAGCCGcGCg -3'
miRNA:   3'- cCCGgCGCGCa------GGaa--Ga--GGUCGGC-CG- -5'
7647 5' -61.9 NC_001973.1 + 61095 0.67 0.631663
Target:  5'- aGGCCGCGCGgCCgaCggagCAGCggCGGCg -3'
miRNA:   3'- cCCGGCGCGCaGGaaGag--GUCG--GCCG- -5'
7647 5' -61.9 NC_001973.1 + 61124 0.66 0.670509
Target:  5'- cGGGgCGCgGCGUCgCUcCUCgAGCucguacCGGCg -3'
miRNA:   3'- -CCCgGCG-CGCAG-GAaGAGgUCG------GCCG- -5'
7647 5' -61.9 NC_001973.1 + 61327 0.68 0.587018
Target:  5'- -cGCCgGCGCGcagcUgCUUCUCCGccaccgcguagucguGCCGGCa -3'
miRNA:   3'- ccCGG-CGCGC----AgGAAGAGGU---------------CGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 62938 0.67 0.602506
Target:  5'- cGGGCCG-GCGUCgucaguagaCUUgCgcgagCCcGCCGGCg -3'
miRNA:   3'- -CCCGGCgCGCAG---------GAA-Ga----GGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 71757 0.71 0.411052
Target:  5'- cGGCCGCGcCGggccccgccgCCgagCUCgaGGCCGGCg -3'
miRNA:   3'- cCCGGCGC-GCa---------GGaa-GAGg-UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 77369 0.7 0.427747
Target:  5'- cGGCCGCGCGcCCgcgc---GCCGGCg -3'
miRNA:   3'- cCCGGCGCGCaGGaagagguCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 80459 0.69 0.50746
Target:  5'- uGGCgGCG-GUCCggCgCCAGCuCGGCc -3'
miRNA:   3'- cCCGgCGCgCAGGaaGaGGUCG-GCCG- -5'
7647 5' -61.9 NC_001973.1 + 81638 0.77 0.167903
Target:  5'- uGGUCGCGCGcgCCg-CUUCGGCCGGCc -3'
miRNA:   3'- cCCGGCGCGCa-GGaaGAGGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 81803 0.75 0.217976
Target:  5'- cGGCCGCgGUGUCCggCgCC-GCCGGCg -3'
miRNA:   3'- cCCGGCG-CGCAGGaaGaGGuCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 84308 0.68 0.532613
Target:  5'- cGGCCGCGUccgccgcccaggacGUCag-CUaCGGCCGGCu -3'
miRNA:   3'- cCCGGCGCG--------------CAGgaaGAgGUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86588 0.68 0.583157
Target:  5'- cGGaGCuCGCGCGcgccggCCUUUUCUAcaCCGGCg -3'
miRNA:   3'- -CC-CG-GCGCGCa-----GGAAGAGGUc-GGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86746 0.7 0.444837
Target:  5'- cGGCgGCGCGcggCCUcgUUCCgcgccuucaaGGCCGGCu -3'
miRNA:   3'- cCCGgCGCGCa--GGAa-GAGG----------UCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 86816 0.78 0.145156
Target:  5'- uGGCCGCGUgcgGUUCUUCUacaaCGGCCGGUg -3'
miRNA:   3'- cCCGGCGCG---CAGGAAGAg---GUCGGCCG- -5'
7647 5' -61.9 NC_001973.1 + 87075 0.75 0.233693
Target:  5'- cGGCCGCGCaacgugugCUUUCUgCCGuGCCGGCa -3'
miRNA:   3'- cCCGGCGCGca------GGAAGA-GGU-CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.