miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7649 3' -52.8 NC_001973.1 + 40783 0.66 0.966875
Target:  5'- cGUGACAUCAUuCCUUGGagcgCGAucGAAg -3'
miRNA:   3'- -UACUGUAGUAcGGAGCCg---GCUuuCUU- -5'
7649 3' -52.8 NC_001973.1 + 151015 0.66 0.959858
Target:  5'- uAUGAUugugccugcuGUCcgG-CUCGGCCGAAGGGu -3'
miRNA:   3'- -UACUG----------UAGuaCgGAGCCGGCUUUCUu -5'
7649 3' -52.8 NC_001973.1 + 23082 0.67 0.951879
Target:  5'- gAUGGCG-C-UGCgCUCGGCCG-AAGAGc -3'
miRNA:   3'- -UACUGUaGuACG-GAGCCGGCuUUCUU- -5'
7649 3' -52.8 NC_001973.1 + 84327 0.67 0.947516
Target:  5'- -gGACGUCA-GCUaCGGCCGGcugcAGGAGg -3'
miRNA:   3'- uaCUGUAGUaCGGaGCCGGCU----UUCUU- -5'
7649 3' -52.8 NC_001973.1 + 72346 0.68 0.915944
Target:  5'- gAUGACAUCAUcCCuaacucgagcUCGGCCGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUAcGG----------AGCCGGCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 122634 0.69 0.889737
Target:  5'- -gGGCG-CcgGCgUCGGUCGAGAGAGc -3'
miRNA:   3'- uaCUGUaGuaCGgAGCCGGCUUUCUU- -5'
7649 3' -52.8 NC_001973.1 + 2663 0.69 0.867484
Target:  5'- gAUGACAUCAcGCCcgagcucgagcUCGGCCGAc---- -3'
miRNA:   3'- -UACUGUAGUaCGG-----------AGCCGGCUuucuu -5'
7649 3' -52.8 NC_001973.1 + 130756 0.7 0.816967
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGGcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 127318 0.7 0.816967
Target:  5'- -cGACAUCAcGCCUCGaGcCCGAuGAGAu -3'
miRNA:   3'- uaCUGUAGUaCGGAGC-C-GGCU-UUCUu -5'
7649 3' -52.8 NC_001973.1 + 72190 0.7 0.816967
Target:  5'- aAUGACAUCAUGCugaaguugagCUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACG----------GAGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 21042 0.7 0.816967
Target:  5'- gAUGACAUCAUGCCcgagcucgagcUCGGCgGGcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 127494 0.71 0.807857
Target:  5'- gAUGACAUCAUGCCuaaacugagcUCGGCgGGcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 16498 0.71 0.807857
Target:  5'- gAUGACAUCAUGCuucgcucgagCUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACG----------GAGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 16420 0.71 0.807857
Target:  5'- gAUGACAUCAUGCuucgcucgagCUCGGCgGAcgcguAAGAu -3'
miRNA:   3'- -UACUGUAGUACG----------GAGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 129040 0.71 0.779528
Target:  5'- gAUGACAUCAUGCCuaaacugagcUCGGuuGAu-GAAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCggCUuuCUU- -5'
7649 3' -52.8 NC_001973.1 + 21219 0.71 0.779528
Target:  5'- gAUGACAUCAUGCCgaacUCGGUgGAuuuuacgcgucGAGAu -3'
miRNA:   3'- -UACUGUAGUACGG----AGCCGgCU-----------UUCUu -5'
7649 3' -52.8 NC_001973.1 + 130854 0.72 0.729578
Target:  5'- gAUGACAUCAUGCCuaaacucgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 129284 0.72 0.729578
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 12093 0.72 0.729578
Target:  5'- gAUGACAUCAUGCCcaaacucgagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG-----------AGCCGgCU-----UUCUu -5'
7649 3' -52.8 NC_001973.1 + 160446 0.72 0.719272
Target:  5'- gAUGACAUCAUGCCuaaacugagcUCGGCgGAcgcguAGGAu -3'
miRNA:   3'- -UACUGUAGUACGG----------AGCCGgCU-----UUCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.