miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7649 5' -56.3 NC_001973.1 + 21017 0.66 0.898068
Target:  5'- aGCCCGau--GAGaucaugcuuguaCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGGCcaguCUC------------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 14616 0.66 0.884569
Target:  5'- cGCCCGGcugUCGGuGCgCGAcuACGUCAa -3'
miRNA:   3'- aCGGGCC---AGUCuCG-GCUacUGUAGUa -5'
7649 5' -56.3 NC_001973.1 + 127463 0.66 0.88387
Target:  5'- gUGCCggcaagGGUCAaucGAGuucaaacCCGAUGACAUCAUg -3'
miRNA:   3'- -ACGGg-----CCAGU---CUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 130830 0.66 0.877478
Target:  5'- aGCCCGaUgAGAucaugccuacCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGGCcAgUCUc---------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 12145 0.66 0.870165
Target:  5'- cUGCCgGgGUCAaucgaguucGAGcCCGAUGAgAUCAUg -3'
miRNA:   3'- -ACGGgC-CAGU---------CUC-GGCUACUgUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 130574 0.66 0.861872
Target:  5'- gGCCgGgGUCGaucGAGuucaaacCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGgC-CAGU---CUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 160420 0.66 0.861872
Target:  5'- gGCCgGuGUCGaucGAGuucaaacCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGgC-CAGU---CUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 72242 0.67 0.854111
Target:  5'- gGCCgGgGUCAaucGAGuucaagcCCGAUGACAUCAUc -3'
miRNA:   3'- aCGGgC-CAGU---CUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 16571 0.67 0.854111
Target:  5'- aGCCCGaUgAGAucaugccGCCGAUGAgAUCAUu -3'
miRNA:   3'- aCGGGCcAgUCU-------CGGCUACUgUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 137873 0.67 0.83048
Target:  5'- aGCgCGGUCAGGGCC----GCGUCGg -3'
miRNA:   3'- aCGgGCCAGUCUCGGcuacUGUAGUa -5'
7649 5' -56.3 NC_001973.1 + 21193 0.68 0.80442
Target:  5'- gGCCgGGgucgaUCGGguucaAGcCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGgCC-----AGUC-----UC-GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 16472 0.68 0.803525
Target:  5'- gGCCgGgGUCAaucGAGuucaagcCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGgC-CAGU---CUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 130725 0.68 0.789925
Target:  5'- cGCgUCGGcCGGGGCaaucgaguucaagacCGAUGACAUCAUg -3'
miRNA:   3'- aCG-GGCCaGUCUCG---------------GCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 12224 0.69 0.747305
Target:  5'- gGCCagGGUCGaucGAGuucaagcCCGAUGACAUCAUg -3'
miRNA:   3'- aCGGg-CCAGU---CUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 129009 0.69 0.732595
Target:  5'- cGCgUCGGcCAGGGucgauaaaggucaaaCCGAUGACAUCAUg -3'
miRNA:   3'- aCG-GGCCaGUCUC---------------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 72081 0.69 0.70866
Target:  5'- aGCCCGaugacaUCAugcuGCCGGUGACAUCAUc -3'
miRNA:   3'- aCGGGCc-----AGUcu--CGGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 158441 0.69 0.70866
Target:  5'- cGCCCGcGUCcGAGCCGGcu-CGUCAa -3'
miRNA:   3'- aCGGGC-CAGuCUCGGCUacuGUAGUa -5'
7649 5' -56.3 NC_001973.1 + 150872 0.7 0.698568
Target:  5'- gGCCUGGcCGGAGCCGG-GGCG-CGUu -3'
miRNA:   3'- aCGGGCCaGUCUCGGCUaCUGUaGUA- -5'
7649 5' -56.3 NC_001973.1 + 72316 0.7 0.697556
Target:  5'- cGCCCgcuagGGUCaacAGAGuucaagcCCGAUGACAUCAUc -3'
miRNA:   3'- aCGGG-----CCAG---UCUC-------GGCUACUGUAGUA- -5'
7649 5' -56.3 NC_001973.1 + 30806 0.7 0.66799
Target:  5'- cGCCCGa--GGGGuuGGUGGCGUCGUu -3'
miRNA:   3'- aCGGGCcagUCUCggCUACUGUAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.