miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7652 5' -57.7 NC_001973.1 + 4197 0.66 0.841168
Target:  5'- cCG-CAGCuggAGGUGCAUGC-GCUGGAa -3'
miRNA:   3'- cGCaGUCG---UCCGUGUGCGaCGACCUc -5'
7652 5' -57.7 NC_001973.1 + 10466 0.72 0.503247
Target:  5'- -gGcCAGCAGcCACACGCccgUGCUGGGGu -3'
miRNA:   3'- cgCaGUCGUCcGUGUGCG---ACGACCUC- -5'
7652 5' -57.7 NC_001973.1 + 16184 0.67 0.797724
Target:  5'- cGUGUCGgcGCAGGCcgcuagaGCGCGCUGCg---- -3'
miRNA:   3'- -CGCAGU--CGUCCG-------UGUGCGACGaccuc -5'
7652 5' -57.7 NC_001973.1 + 17049 0.67 0.807456
Target:  5'- gGCgGUCGGCgcuuGGGCggugaGCAUGCUGUUGGc- -3'
miRNA:   3'- -CG-CAGUCG----UCCG-----UGUGCGACGACCuc -5'
7652 5' -57.7 NC_001973.1 + 18232 0.87 0.062961
Target:  5'- cCGUCAGguGGCACGCGCUGCUcGAGu -3'
miRNA:   3'- cGCAGUCguCCGUGUGCGACGAcCUC- -5'
7652 5' -57.7 NC_001973.1 + 21064 0.66 0.824657
Target:  5'- aGC-UCGGCGGGCGCguaggaucuuACGCgucgGCcGGGGu -3'
miRNA:   3'- -CGcAGUCGUCCGUG----------UGCGa---CGaCCUC- -5'
7652 5' -57.7 NC_001973.1 + 28907 0.7 0.629795
Target:  5'- uGCGgucCAGCAgcuccgagucguugGGCuuGCACGCgGCUGGGGc -3'
miRNA:   3'- -CGCa--GUCGU--------------CCG--UGUGCGaCGACCUC- -5'
7652 5' -57.7 NC_001973.1 + 40014 0.66 0.849146
Target:  5'- cCGcCAGCAGGCcgaacuCGCGCUGCa---- -3'
miRNA:   3'- cGCaGUCGUCCGu-----GUGCGACGaccuc -5'
7652 5' -57.7 NC_001973.1 + 45858 0.71 0.541251
Target:  5'- gGCGUC-GCGGGCGCGCGCUccucggccgcggcGCUGc-- -3'
miRNA:   3'- -CGCAGuCGUCCGUGUGCGA-------------CGACcuc -5'
7652 5' -57.7 NC_001973.1 + 46320 0.7 0.632844
Target:  5'- uCGUCGccuuucucgcGCAGGgCGCGCuGCUGCUGGuGc -3'
miRNA:   3'- cGCAGU----------CGUCC-GUGUG-CGACGACCuC- -5'
7652 5' -57.7 NC_001973.1 + 53563 0.67 0.768439
Target:  5'- uCGUCGGCcaugucugcgacugAGGCGCGCGCcgGCgccGAGg -3'
miRNA:   3'- cGCAGUCG--------------UCCGUGUGCGa-CGac-CUC- -5'
7652 5' -57.7 NC_001973.1 + 54958 0.68 0.752365
Target:  5'- --uUCAGCGGGCACGC-CgaugagGCcGGAGg -3'
miRNA:   3'- cgcAGUCGUCCGUGUGcGa-----CGaCCUC- -5'
7652 5' -57.7 NC_001973.1 + 60416 0.68 0.733071
Target:  5'- uUG-CAGCGGGCGCGCuC-GCUGGAu -3'
miRNA:   3'- cGCaGUCGUCCGUGUGcGaCGACCUc -5'
7652 5' -57.7 NC_001973.1 + 64866 0.66 0.85693
Target:  5'- cCGUCccuGCGGGCuCGCGCccgaagUGCUGGc- -3'
miRNA:   3'- cGCAGu--CGUCCGuGUGCG------ACGACCuc -5'
7652 5' -57.7 NC_001973.1 + 81051 0.67 0.771241
Target:  5'- cGCGUCGaCGGGCGUGCGCUucaGUUGGGa -3'
miRNA:   3'- -CGCAGUcGUCCGUGUGCGA---CGACCUc -5'
7652 5' -57.7 NC_001973.1 + 84329 0.68 0.733071
Target:  5'- aCGUCAGCuacGGC-CG-GCUGCaGGAGg -3'
miRNA:   3'- cGCAGUCGu--CCGuGUgCGACGaCCUC- -5'
7652 5' -57.7 NC_001973.1 + 92617 0.66 0.816139
Target:  5'- cGCGcCAGCAGGCGUAaGC-GCUGGu- -3'
miRNA:   3'- -CGCaGUCGUCCGUGUgCGaCGACCuc -5'
7652 5' -57.7 NC_001973.1 + 94538 0.69 0.693519
Target:  5'- cGCGcCGGUcaucgacuGGGCggaccgcaacuACGCGCUGgUGGAGg -3'
miRNA:   3'- -CGCaGUCG--------UCCG-----------UGUGCGACgACCUC- -5'
7652 5' -57.7 NC_001973.1 + 95399 0.68 0.752365
Target:  5'- cCGggCGGCAagGGCGCcaaccCGCUGCUGGGc -3'
miRNA:   3'- cGCa-GUCGU--CCGUGu----GCGACGACCUc -5'
7652 5' -57.7 NC_001973.1 + 105469 0.68 0.72329
Target:  5'- cGCG-CGGCGGGCACAUGaugugGCcGGGc -3'
miRNA:   3'- -CGCaGUCGUCCGUGUGCga---CGaCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.