miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7652 5' -57.7 NC_001973.1 + 106968 0.74 0.394833
Target:  5'- cGCGcUCGGCGuGCGCGCGCUGCagaGGAa -3'
miRNA:   3'- -CGC-AGUCGUcCGUGUGCGACGa--CCUc -5'
7652 5' -57.7 NC_001973.1 + 120789 0.68 0.742765
Target:  5'- uCGagGGCGuGCGCGCGCUGCUGa-- -3'
miRNA:   3'- cGCagUCGUcCGUGUGCGACGACcuc -5'
7652 5' -57.7 NC_001973.1 + 124307 0.69 0.692518
Target:  5'- aCGUCGGC-GGCACGCGCUcgagcgaGCUGc-- -3'
miRNA:   3'- cGCAGUCGuCCGUGUGCGA-------CGACcuc -5'
7652 5' -57.7 NC_001973.1 + 130778 0.66 0.824657
Target:  5'- aGC-UCGGCGGGCGCguaggauuuuACGCgucgGCcGGGGu -3'
miRNA:   3'- -CGcAGUCGUCCGUG----------UGCGa---CGaCCUC- -5'
7652 5' -57.7 NC_001973.1 + 131491 0.66 0.824657
Target:  5'- -gGUCGGCGGGCccgcCGCGC-GCcGGAu -3'
miRNA:   3'- cgCAGUCGUCCGu---GUGCGaCGaCCUc -5'
7652 5' -57.7 NC_001973.1 + 131871 0.67 0.771241
Target:  5'- cGCaaugCGGCAGGCACagacGCGCUcGgUGGAa -3'
miRNA:   3'- -CGca--GUCGUCCGUG----UGCGA-CgACCUc -5'
7652 5' -57.7 NC_001973.1 + 133477 0.68 0.713432
Target:  5'- aGCGcCAGCGGGCgaGCACGCUcGCg---- -3'
miRNA:   3'- -CGCaGUCGUCCG--UGUGCGA-CGaccuc -5'
7652 5' -57.7 NC_001973.1 + 133916 0.68 0.73696
Target:  5'- cGCGUCgccgccgcccuguccAGguGGUAgCACGCggGCUGGGc -3'
miRNA:   3'- -CGCAG---------------UCguCCGU-GUGCGa-CGACCUc -5'
7652 5' -57.7 NC_001973.1 + 138635 0.66 0.85693
Target:  5'- uGCGcCAGCGcgggcGGCACGgGCUuuUGGAa -3'
miRNA:   3'- -CGCaGUCGU-----CCGUGUgCGAcgACCUc -5'
7652 5' -57.7 NC_001973.1 + 146594 1.1 0.001742
Target:  5'- uGCGUCAGCAGGCACACGCUGCUGGAGu -3'
miRNA:   3'- -CGCAGUCGUCCGUGUGCGACGACCUC- -5'
7652 5' -57.7 NC_001973.1 + 160801 0.68 0.742765
Target:  5'- aGC-UCGGCGGGCGCguaggauuuuACGCgucgGCcGGAGu -3'
miRNA:   3'- -CGcAGUCGUCCGUG----------UGCGa---CGaCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.