miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7652 5' -57.7 NC_001973.1 + 105469 0.68 0.72329
Target:  5'- cGCG-CGGCGGGCACAUGaugugGCcGGGc -3'
miRNA:   3'- -CGCaGUCGUCCGUGUGCga---CGaCCUc -5'
7652 5' -57.7 NC_001973.1 + 133477 0.68 0.713432
Target:  5'- aGCGcCAGCGGGCgaGCACGCUcGCg---- -3'
miRNA:   3'- -CGCaGUCGUCCG--UGUGCGA-CGaccuc -5'
7652 5' -57.7 NC_001973.1 + 94538 0.69 0.693519
Target:  5'- cGCGcCGGUcaucgacuGGGCggaccgcaacuACGCGCUGgUGGAGg -3'
miRNA:   3'- -CGCaGUCG--------UCCG-----------UGUGCGACgACCUC- -5'
7652 5' -57.7 NC_001973.1 + 124307 0.69 0.692518
Target:  5'- aCGUCGGC-GGCACGCGCUcgagcgaGCUGc-- -3'
miRNA:   3'- cGCAGUCGuCCGUGUGCGA-------CGACcuc -5'
7652 5' -57.7 NC_001973.1 + 46320 0.7 0.632844
Target:  5'- uCGUCGccuuucucgcGCAGGgCGCGCuGCUGCUGGuGc -3'
miRNA:   3'- cGCAGU----------CGUCC-GUGUG-CGACGACCuC- -5'
7652 5' -57.7 NC_001973.1 + 28907 0.7 0.629795
Target:  5'- uGCGgucCAGCAgcuccgagucguugGGCuuGCACGCgGCUGGGGc -3'
miRNA:   3'- -CGCa--GUCGU--------------CCG--UGUGCGaCGACCUC- -5'
7652 5' -57.7 NC_001973.1 + 45858 0.71 0.541251
Target:  5'- gGCGUC-GCGGGCGCGCGCUccucggccgcggcGCUGc-- -3'
miRNA:   3'- -CGCAGuCGUCCGUGUGCGA-------------CGACcuc -5'
7652 5' -57.7 NC_001973.1 + 10466 0.72 0.503247
Target:  5'- -gGcCAGCAGcCACACGCccgUGCUGGGGu -3'
miRNA:   3'- cgCaGUCGUCcGUGUGCG---ACGACCUC- -5'
7652 5' -57.7 NC_001973.1 + 106968 0.74 0.394833
Target:  5'- cGCGcUCGGCGuGCGCGCGCUGCagaGGAa -3'
miRNA:   3'- -CGC-AGUCGUcCGUGUGCGACGa--CCUc -5'
7652 5' -57.7 NC_001973.1 + 18232 0.87 0.062961
Target:  5'- cCGUCAGguGGCACGCGCUGCUcGAGu -3'
miRNA:   3'- cGCAGUCguCCGUGUGCGACGAcCUC- -5'
7652 5' -57.7 NC_001973.1 + 146594 1.1 0.001742
Target:  5'- uGCGUCAGCAGGCACACGCUGCUGGAGu -3'
miRNA:   3'- -CGCAGUCGUCCGUGUGCGACGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.