miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 146103 0.67 0.952563
Target:  5'- aGGUCGGgcCGCGGCGcugaGCCgGCUCGggAGCg -3'
miRNA:   3'- gUUAGCC--GUGUUGC----CGGaCGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 65182 0.67 0.951317
Target:  5'- gAGUCGGCGCucaacuacaugcucGACaugGGCCgGCaCGAGCg -3'
miRNA:   3'- gUUAGCCGUG--------------UUG---CCGGaCGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 50535 0.67 0.948325
Target:  5'- --cUCGGC-CAGCuGGCgCucgUGCUCGAGUu -3'
miRNA:   3'- guuAGCCGuGUUG-CCG-G---ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 8855 0.67 0.948325
Target:  5'- gGcgCGGCGacACGGgCUGUUCGAGa -3'
miRNA:   3'- gUuaGCCGUguUGCCgGACGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 23814 0.67 0.948325
Target:  5'- --uUCGGCGacGCGGCCcucgccgaGUUCAAGUa -3'
miRNA:   3'- guuAGCCGUguUGCCGGa-------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 70118 0.67 0.948325
Target:  5'- --cUCGGCGCccGCGGCgaUG-UCGAGCa -3'
miRNA:   3'- guuAGCCGUGu-UGCCGg-ACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 111012 0.67 0.948325
Target:  5'- gAcgUGaGCAUcGCGuGCCUGCUCAcGCc -3'
miRNA:   3'- gUuaGC-CGUGuUGC-CGGACGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 4852 0.67 0.948325
Target:  5'- aAGUCGGCgggcGCGACGuuuccGCCgUGCUCGuacaagGGCa -3'
miRNA:   3'- gUUAGCCG----UGUUGC-----CGG-ACGAGU------UCG- -5'
7654 3' -53.1 NC_001973.1 + 4960 0.67 0.948325
Target:  5'- aCGAaCGGCACGGCGaGCC-GgUCGuGCg -3'
miRNA:   3'- -GUUaGCCGUGUUGC-CGGaCgAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 22534 0.67 0.948325
Target:  5'- aCAAUUGcGCGCGACaggugacggcgGGCgaGUUCGAGUg -3'
miRNA:   3'- -GUUAGC-CGUGUUG-----------CCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45837 0.67 0.948325
Target:  5'- gGcgCGGCGuuCGugGGCCUggGCgucgCGGGCg -3'
miRNA:   3'- gUuaGCCGU--GUugCCGGA--CGa---GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45878 0.67 0.947888
Target:  5'- --cUCGGC-C-GCGGCgCUGCUCGucgacuucgagacGGCa -3'
miRNA:   3'- guuAGCCGuGuUGCCG-GACGAGU-------------UCG- -5'
7654 3' -53.1 NC_001973.1 + 77967 0.67 0.943844
Target:  5'- --cUCGaacGC-CAugGGCCUGCcCGAGUa -3'
miRNA:   3'- guuAGC---CGuGUugCCGGACGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 7100 0.67 0.943844
Target:  5'- ---gCGcGCGCGACcGCCgucgUGCUCGAGUg -3'
miRNA:   3'- guuaGC-CGUGUUGcCGG----ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 28951 0.67 0.943844
Target:  5'- ---gCGGCAgCGGgGGCCgGCagUCGGGCg -3'
miRNA:   3'- guuaGCCGU-GUUgCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 111783 0.67 0.943844
Target:  5'- ---gCGGCAUAcACGGCCagaagggcgUGCUCAacgGGUg -3'
miRNA:   3'- guuaGCCGUGU-UGCCGG---------ACGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 105360 0.67 0.939117
Target:  5'- aCGAagCGGCGCGgaggcgucgGCGGCUUGa-CGAGCa -3'
miRNA:   3'- -GUUa-GCCGUGU---------UGCCGGACgaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 53857 0.67 0.939117
Target:  5'- ---cCGGCgGCGGCGGCgCcGC-CGAGCg -3'
miRNA:   3'- guuaGCCG-UGUUGCCG-GaCGaGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 89442 0.67 0.939117
Target:  5'- --uUCGGCGCGcACGGaCCccucgcgGCUCAcgucgGGCg -3'
miRNA:   3'- guuAGCCGUGU-UGCC-GGa------CGAGU-----UCG- -5'
7654 3' -53.1 NC_001973.1 + 44410 0.68 0.934141
Target:  5'- --cUCGcGCAgCAGCGGCUccGCUCGGGg -3'
miRNA:   3'- guuAGC-CGU-GUUGCCGGa-CGAGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.