miRNA display CGI


Results 21 - 40 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 22534 0.67 0.948325
Target:  5'- aCAAUUGcGCGCGACaggugacggcgGGCgaGUUCGAGUg -3'
miRNA:   3'- -GUUAGC-CGUGUUG-----------CCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 23221 0.66 0.970243
Target:  5'- gCAGU-GGCGCAGggccUGGCgCUGCU-GAGCg -3'
miRNA:   3'- -GUUAgCCGUGUU----GCCG-GACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 23814 0.67 0.948325
Target:  5'- --uUCGGCGacGCGGCCcucgccgaGUUCAAGUa -3'
miRNA:   3'- guuAGCCGUguUGCCGGa-------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 27856 0.73 0.685859
Target:  5'- ---cCGGCGCuGGCGGCCgcgGCcgCGGGCg -3'
miRNA:   3'- guuaGCCGUG-UUGCCGGa--CGa-GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 28630 0.69 0.905515
Target:  5'- aGGUCGuuGCGCAGCGaGuCCUGCagcugcgCGAGCg -3'
miRNA:   3'- gUUAGC--CGUGUUGC-C-GGACGa------GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 28951 0.67 0.943844
Target:  5'- ---gCGGCAgCGGgGGCCgGCagUCGGGCg -3'
miRNA:   3'- guuaGCCGU-GUUgCCGGaCG--AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 29744 0.68 0.917714
Target:  5'- ---cCGGCcuucuuCGACGGCCUGUgCGAGa -3'
miRNA:   3'- guuaGCCGu-----GUUGCCGGACGaGUUCg -5'
7654 3' -53.1 NC_001973.1 + 30395 0.69 0.878199
Target:  5'- ---cCGGCGCGGCGGCggcgGCggAGGCg -3'
miRNA:   3'- guuaGCCGUGUUGCCGga--CGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 30491 0.69 0.878199
Target:  5'- gCAGUCgGGCACGACGGU--GCgcaGGGCg -3'
miRNA:   3'- -GUUAG-CCGUGUUGCCGgaCGag-UUCG- -5'
7654 3' -53.1 NC_001973.1 + 31022 0.75 0.571121
Target:  5'- -cGUCGGCGCucAUGaUCUGCUCGAGCg -3'
miRNA:   3'- guUAGCCGUGu-UGCcGGACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 31364 0.66 0.973115
Target:  5'- uGGUCGcCGCGGCGGUgUGCgCcAGCg -3'
miRNA:   3'- gUUAGCcGUGUUGCCGgACGaGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 38436 0.67 0.956947
Target:  5'- -cGUUGGCGCGcaccGCGGCCguuccguacuuggcgGCgaCGAGCg -3'
miRNA:   3'- guUAGCCGUGU----UGCCGGa--------------CGa-GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 38521 0.66 0.970243
Target:  5'- ---gCGGCACAGCgcgaGGCCgucGCaaAGGCg -3'
miRNA:   3'- guuaGCCGUGUUG----CCGGa--CGagUUCG- -5'
7654 3' -53.1 NC_001973.1 + 38630 0.76 0.530205
Target:  5'- -uGUCGGCgACAcCGGCCgUGCUCGcGGCg -3'
miRNA:   3'- guUAGCCG-UGUuGCCGG-ACGAGU-UCG- -5'
7654 3' -53.1 NC_001973.1 + 40481 0.67 0.959956
Target:  5'- aAAUCGacGCGCGucaGCGGCCUGaUCAccgugacGGCg -3'
miRNA:   3'- gUUAGC--CGUGU---UGCCGGACgAGU-------UCG- -5'
7654 3' -53.1 NC_001973.1 + 41137 0.67 0.95656
Target:  5'- -uGUCGGCgGCGGCGGCg-GUcagCGGGCg -3'
miRNA:   3'- guUAGCCG-UGUUGCCGgaCGa--GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 44410 0.68 0.934141
Target:  5'- --cUCGcGCAgCAGCGGCUccGCUCGGGg -3'
miRNA:   3'- guuAGC-CGU-GUUGCCGGa-CGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 44774 0.73 0.685859
Target:  5'- ----gGGCACAGCGGUUUGCU--GGCg -3'
miRNA:   3'- guuagCCGUGUUGCCGGACGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 45366 0.7 0.830477
Target:  5'- -cGUCGuGCAgUAGCcGCCuUGCUCGAGCa -3'
miRNA:   3'- guUAGC-CGU-GUUGcCGG-ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 45641 0.66 0.970243
Target:  5'- -cGUCGaGCGCGgcgucguacGCGGCCUGCgcgucucggauUCGcGCg -3'
miRNA:   3'- guUAGC-CGUGU---------UGCCGGACG-----------AGUuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.