miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 1824 0.68 0.917714
Target:  5'- cCGAgCGcGCAC-ACGGCCagGCUguGGCa -3'
miRNA:   3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 4852 0.67 0.948325
Target:  5'- aAGUCGGCgggcGCGACGuuuccGCCgUGCUCGuacaagGGCa -3'
miRNA:   3'- gUUAGCCG----UGUUGC-----CGG-ACGAGU------UCG- -5'
7654 3' -53.1 NC_001973.1 + 4960 0.67 0.948325
Target:  5'- aCGAaCGGCACGGCGaGCC-GgUCGuGCg -3'
miRNA:   3'- -GUUaGCCGUGUUGC-CGGaCgAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 5431 0.66 0.975781
Target:  5'- uGAUCGcGUcCAAgGaGCCgaGCUCGGGCa -3'
miRNA:   3'- gUUAGC-CGuGUUgC-CGGa-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 5931 0.66 0.973115
Target:  5'- gCGGUCGcGCGCAcgaugcgcgacGCGGCCgGCggauGCg -3'
miRNA:   3'- -GUUAGC-CGUGU-----------UGCCGGaCGaguuCG- -5'
7654 3' -53.1 NC_001973.1 + 6950 0.67 0.952563
Target:  5'- ---cCGGCGC-ACGGCCuccggcUGCUCGcccgaacagGGCc -3'
miRNA:   3'- guuaGCCGUGuUGCCGG------ACGAGU---------UCG- -5'
7654 3' -53.1 NC_001973.1 + 7049 0.66 0.975781
Target:  5'- gAGUCGGUcgugaacgaGCuGCGcGcCCUGgUCGAGCg -3'
miRNA:   3'- gUUAGCCG---------UGuUGC-C-GGACgAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 7100 0.67 0.943844
Target:  5'- ---gCGcGCGCGACcGCCgucgUGCUCGAGUg -3'
miRNA:   3'- guuaGC-CGUGUUGcCGG----ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 7271 0.69 0.89165
Target:  5'- --cUCGGCGCGcgGCGcGCCcGCuaccgggUCAAGCa -3'
miRNA:   3'- guuAGCCGUGU--UGC-CGGaCG-------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 8100 0.7 0.870784
Target:  5'- ---aCGGCgaGCAcCGGCCgGCUCGuGCa -3'
miRNA:   3'- guuaGCCG--UGUuGCCGGaCGAGUuCG- -5'
7654 3' -53.1 NC_001973.1 + 8855 0.67 0.948325
Target:  5'- gGcgCGGCGacACGGgCUGUUCGAGa -3'
miRNA:   3'- gUuaGCCGUguUGCCgGACGAGUUCg -5'
7654 3' -53.1 NC_001973.1 + 9769 0.68 0.93363
Target:  5'- gCGAUCGuuuUAUAGCGGCCcaucaauUGCUCcGGCg -3'
miRNA:   3'- -GUUAGCc--GUGUUGCCGG-------ACGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 10341 0.71 0.785466
Target:  5'- aGGUCGGCGauGCGGCC-GUUCGgcuGGCa -3'
miRNA:   3'- gUUAGCCGUguUGCCGGaCGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 16186 0.7 0.863145
Target:  5'- -uGUCGGCGCA--GGCC-GCUaGAGCg -3'
miRNA:   3'- guUAGCCGUGUugCCGGaCGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 16907 0.72 0.766387
Target:  5'- ---cCGGCgGCGGCGGCCU-CUCGgcGGCg -3'
miRNA:   3'- guuaGCCG-UGUUGCCGGAcGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 17259 0.76 0.530205
Target:  5'- --cUCGGcCGCGGCGGCCgcgcaCUCGGGCa -3'
miRNA:   3'- guuAGCC-GUGUUGCCGGac---GAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 17578 0.71 0.821819
Target:  5'- gAAUCGGCGCccgaguCGGCgUGCU--GGCa -3'
miRNA:   3'- gUUAGCCGUGuu----GCCGgACGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 18265 0.74 0.658804
Target:  5'- -cGUCGGCGCAcACGGCCgacgaggGCaccagcgccacgcuuUCGAGCa -3'
miRNA:   3'- guUAGCCGUGU-UGCCGGa------CG---------------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 18617 0.69 0.905515
Target:  5'- -cGUCGGCA--ACGaGCCgccGUUCGAGCc -3'
miRNA:   3'- guUAGCCGUguUGC-CGGa--CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 20084 0.68 0.917714
Target:  5'- cCGAgCGaGCAC-ACGGCCagGCUguGGCa -3'
miRNA:   3'- -GUUaGC-CGUGuUGCCGGa-CGAguUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.