miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7654 3' -53.1 NC_001973.1 + 145551 1.12 0.00328
Target:  5'- aCAAUCGGCACAACGGCCUGCUCAAGCu -3'
miRNA:   3'- -GUUAGCCGUGUUGCCGGACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 132543 0.82 0.281694
Target:  5'- ----gGGCGCGGCGGCggGCUCGAGCg -3'
miRNA:   3'- guuagCCGUGUUGCCGgaCGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 126280 0.79 0.380629
Target:  5'- gCGAUCuGGCGCu-CGGUCaUGCUCGAGCg -3'
miRNA:   3'- -GUUAG-CCGUGuuGCCGG-ACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 110746 0.77 0.510145
Target:  5'- gCGGUCGccgacagguuuGCGCAucucgagacgGCGGCCUGCUCcGGCg -3'
miRNA:   3'- -GUUAGC-----------CGUGU----------UGCCGGACGAGuUCG- -5'
7654 3' -53.1 NC_001973.1 + 56333 0.76 0.530205
Target:  5'- --cUCGGCGCcgcgcucGCGGCCgcGCUCGGGCc -3'
miRNA:   3'- guuAGCCGUGu------UGCCGGa-CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 38630 0.76 0.530205
Target:  5'- -uGUCGGCgACAcCGGCCgUGCUCGcGGCg -3'
miRNA:   3'- guUAGCCG-UGUuGCCGG-ACGAGU-UCG- -5'
7654 3' -53.1 NC_001973.1 + 17259 0.76 0.530205
Target:  5'- --cUCGGcCGCGGCGGCCgcgcaCUCGGGCa -3'
miRNA:   3'- guuAGCC-GUGUUGCCGGac---GAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 50763 0.76 0.530205
Target:  5'- --cUUGGC-CAGCGGCUUGUUgGAGCg -3'
miRNA:   3'- guuAGCCGuGUUGCCGGACGAgUUCG- -5'
7654 3' -53.1 NC_001973.1 + 31022 0.75 0.571121
Target:  5'- -cGUCGGCGCucAUGaUCUGCUCGAGCg -3'
miRNA:   3'- guUAGCCGUGu-UGCcGGACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 48399 0.75 0.581479
Target:  5'- aCAGUCGGCGCuga-GCCUGCUCcaagacgcccAAGCg -3'
miRNA:   3'- -GUUAGCCGUGuugcCGGACGAG----------UUCG- -5'
7654 3' -53.1 NC_001973.1 + 18265 0.74 0.658804
Target:  5'- -cGUCGGCGCAcACGGCCgacgaggGCaccagcgccacgcuuUCGAGCa -3'
miRNA:   3'- guUAGCCGUGU-UGCCGGa------CG---------------AGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 61676 0.74 0.665067
Target:  5'- aCAGUcgCGGCGCGaaGCGGCgUcggcgcGCUCGAGCa -3'
miRNA:   3'- -GUUA--GCCGUGU--UGCCGgA------CGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 44774 0.73 0.685859
Target:  5'- ----gGGCACAGCGGUUUGCU--GGCg -3'
miRNA:   3'- guuagCCGUGUUGCCGGACGAguUCG- -5'
7654 3' -53.1 NC_001973.1 + 27856 0.73 0.685859
Target:  5'- ---cCGGCGCuGGCGGCCgcgGCcgCGGGCg -3'
miRNA:   3'- guuaGCCGUG-UUGCCGGa--CGa-GUUCG- -5'
7654 3' -53.1 NC_001973.1 + 75230 0.73 0.716674
Target:  5'- aCGGUCGGCGCGuacaacaucaACGuucucgacacccGCCUGCUCGacgGGCu -3'
miRNA:   3'- -GUUAGCCGUGU----------UGC------------CGGACGAGU---UCG- -5'
7654 3' -53.1 NC_001973.1 + 120948 0.73 0.716674
Target:  5'- gCGGUCuGCACGGCGGCCaGCgc-GGCg -3'
miRNA:   3'- -GUUAGcCGUGUUGCCGGaCGaguUCG- -5'
7654 3' -53.1 NC_001973.1 + 115396 0.73 0.726808
Target:  5'- ---cCGGCugAGCGcGCacgauucgcggCUGCUCAAGCu -3'
miRNA:   3'- guuaGCCGugUUGC-CG-----------GACGAGUUCG- -5'
7654 3' -53.1 NC_001973.1 + 46214 0.73 0.726808
Target:  5'- --uUCGcGCGCGACGGCCgGgUCAuguGCg -3'
miRNA:   3'- guuAGC-CGUGUUGCCGGaCgAGUu--CG- -5'
7654 3' -53.1 NC_001973.1 + 16907 0.72 0.766387
Target:  5'- ---cCGGCgGCGGCGGCCU-CUCGgcGGCg -3'
miRNA:   3'- guuaGCCG-UGUUGCCGGAcGAGU--UCG- -5'
7654 3' -53.1 NC_001973.1 + 10341 0.71 0.785466
Target:  5'- aGGUCGGCGauGCGGCC-GUUCGgcuGGCa -3'
miRNA:   3'- gUUAGCCGUguUGCCGGaCGAGU---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.