miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 64871 0.72 0.252559
Target:  5'- cCUgCgGGCucGCGCCCGaAGUGCuGGCGCg -3'
miRNA:   3'- cGA-GgCCGc-CGCGGGC-UCACG-CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 152390 0.72 0.258255
Target:  5'- gGCgCgGGCGG-GCgCGGG-GCGGCGCg -3'
miRNA:   3'- -CGaGgCCGCCgCGgGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 122614 0.72 0.264055
Target:  5'- gGCgUCGGCGGCGCCgacgCGGGcGCcGGCGUc -3'
miRNA:   3'- -CGaGGCCGCCGCGG----GCUCaCG-CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 5849 0.72 0.266405
Target:  5'- -gUUCGGCGaGCGCacgcgCCGgcgucucgagaggcuGGUGCGGCGCa -3'
miRNA:   3'- cgAGGCCGC-CGCG-----GGC---------------UCACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 27858 0.71 0.269961
Target:  5'- gGCgCUGGCGGCcgcgGCCgCGGGcGCGGgCGCg -3'
miRNA:   3'- -CGaGGCCGCCG----CGG-GCUCaCGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 56343 0.71 0.28209
Target:  5'- cGCUCgCGGCcGCGCUCGGGccccgacuCGGCGCc -3'
miRNA:   3'- -CGAG-GCCGcCGCGGGCUCac------GCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 106957 0.71 0.28209
Target:  5'- aGCgcgCCGG-GcGCGCUCGGcGUGCGcGCGCu -3'
miRNA:   3'- -CGa--GGCCgC-CGCGGGCU-CACGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 133295 0.71 0.28209
Target:  5'- cGCggCCGGCGGCgGCgCCGucGcGCGGCGa -3'
miRNA:   3'- -CGa-GGCCGCCG-CG-GGCu-CaCGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 32054 0.71 0.290835
Target:  5'- cGCguugCCGGCGGUGCgCUGccagcccagcgagaaGGUG-GGCGCg -3'
miRNA:   3'- -CGa---GGCCGCCGCG-GGC---------------UCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 51814 0.71 0.294648
Target:  5'- uGCUgCGcGaGGCGCCCGcGUGCguGGUGCg -3'
miRNA:   3'- -CGAgGC-CgCCGCGGGCuCACG--CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 103903 0.71 0.306318
Target:  5'- aGCgagCCGccGCGGCGCgaCGAGgagcgcgucgucGCGGCGCg -3'
miRNA:   3'- -CGa--GGC--CGCCGCGg-GCUCa-----------CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35032 0.71 0.307636
Target:  5'- cCUCCucGCGGCcUUCGAG-GCGGCGCa -3'
miRNA:   3'- cGAGGc-CGCCGcGGGCUCaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 74351 0.7 0.314293
Target:  5'- --gCCGGCGGCGCa-----GCGGCGCa -3'
miRNA:   3'- cgaGGCCGCCGCGggcucaCGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 44447 0.7 0.314293
Target:  5'- cGCUCgGGCgcgGGCGCUCGGGgaucGaacgGGCGCu -3'
miRNA:   3'- -CGAGgCCG---CCGCGGGCUCa---Cg---CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 74782 0.7 0.321058
Target:  5'- aCUUgGuGCGGuCGCCgGGGUG-GGCGCg -3'
miRNA:   3'- cGAGgC-CGCC-GCGGgCUCACgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 55431 0.7 0.321058
Target:  5'- gGCggCGGCGG-GCCCGA---CGGCGCg -3'
miRNA:   3'- -CGagGCCGCCgCGGGCUcacGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 121702 0.7 0.330711
Target:  5'- aGCUCggCGGCGGCGUcgucguccucgucguCCcaacGGUGCGGCGg -3'
miRNA:   3'- -CGAG--GCCGCCGCG---------------GGc---UCACGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 42582 0.7 0.341289
Target:  5'- cGUggCUGaCGGUGCUCGccaaggaGGUGCGGCGCg -3'
miRNA:   3'- -CGa-GGCcGCCGCGGGC-------UCACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 46378 0.7 0.3492
Target:  5'- ---aCGGUGGUuCCUGAGggauuUGCGGCGCg -3'
miRNA:   3'- cgagGCCGCCGcGGGCUC-----ACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 58042 0.69 0.356505
Target:  5'- gGCUCCGGCGGCGgCg----GCGGCu- -3'
miRNA:   3'- -CGAGGCCGCCGCgGgcucaCGCCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.