miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 3' -64.9 NC_001973.1 + 110785 0.68 0.443675
Target:  5'- uGCUCCGGCGGCacgGCgacgacgacgaCGAG-GCcGCGCc -3'
miRNA:   3'- -CGAGGCCGCCG---CGg----------GCUCaCGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 64022 0.68 0.443675
Target:  5'- uCUCUGaccuGCGGCGCCCGGaaGCuguucgucaacgGGCGCa -3'
miRNA:   3'- cGAGGC----CGCCGCGGGCUcaCG------------CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 86617 0.68 0.442829
Target:  5'- --aCCGGCgacaagaGGCGCUaCGAGUGCGccuacuGCGCc -3'
miRNA:   3'- cgaGGCCG-------CCGCGG-GCUCACGC------CGCG- -5'
7656 3' -64.9 NC_001973.1 + 45799 0.68 0.435258
Target:  5'- uGCUCgaGGCGGCGUUgGGagucaaucuaguGUGCgccGGCGCg -3'
miRNA:   3'- -CGAGg-CCGCCGCGGgCU------------CACG---CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 115079 0.68 0.435258
Target:  5'- aUUCCGGCcucGGCGUCCGccga-GGCGCg -3'
miRNA:   3'- cGAGGCCG---CCGCGGGCucacgCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 35427 0.68 0.435258
Target:  5'- cGCUCgacgcgcaaCGcGCGGuCGUCgaCGAGgcgGCGGCGCa -3'
miRNA:   3'- -CGAG---------GC-CGCC-GCGG--GCUCa--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 42873 0.68 0.426935
Target:  5'- aGCgagCGGCGGCGCgUGAucUGCaGCGCg -3'
miRNA:   3'- -CGag-GCCGCCGCGgGCUc-ACGcCGCG- -5'
7656 3' -64.9 NC_001973.1 + 7826 0.69 0.394613
Target:  5'- cGCUCUcuguugagaacgGGCGGCGCCgcgcccguCGAGc-UGGCGCg -3'
miRNA:   3'- -CGAGG------------CCGCCGCGG--------GCUCacGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 6418 0.69 0.394613
Target:  5'- cGCggCGGCGGCGCgCCGA---CGaGCGCg -3'
miRNA:   3'- -CGagGCCGCCGCG-GGCUcacGC-CGCG- -5'
7656 3' -64.9 NC_001973.1 + 14608 0.69 0.386783
Target:  5'- ---gCGGUGGcCGCCCGGcUGuCGGUGCg -3'
miRNA:   3'- cgagGCCGCC-GCGGGCUcAC-GCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 10045 0.69 0.386783
Target:  5'- uGUUCUGGUGGCGCaCGuGccGCaGGCGCc -3'
miRNA:   3'- -CGAGGCCGCCGCGgGCuCa-CG-CCGCG- -5'
7656 3' -64.9 NC_001973.1 + 94407 0.69 0.379056
Target:  5'- gGCcCgCGGCGcCGCCCGGaccgGCGGCGUu -3'
miRNA:   3'- -CGaG-GCCGCcGCGGGCUca--CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 146082 0.69 0.371433
Target:  5'- gGCUCgGGCGG-GCggggacuaaggUCGGGccGCGGCGCu -3'
miRNA:   3'- -CGAGgCCGCCgCG-----------GGCUCa-CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 52158 0.69 0.371433
Target:  5'- gGCagCCGGUGGgCGCCguacuuggcgaCGAGcGCGGCGg -3'
miRNA:   3'- -CGa-GGCCGCC-GCGG-----------GCUCaCGCCGCg -5'
7656 3' -64.9 NC_001973.1 + 121310 0.69 0.369167
Target:  5'- cGCgcgCCGGCGGaCGCgCCGAcgagcucaccgacagGCGGuCGCg -3'
miRNA:   3'- -CGa--GGCCGCC-GCG-GGCUca-------------CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 71752 0.69 0.36317
Target:  5'- cGCcCCGGCcgcgccgGGCcccgccgccgaGCUCGAGgccgGCGGCGCc -3'
miRNA:   3'- -CGaGGCCG-------CCG-----------CGGGCUCa---CGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 58042 0.69 0.356505
Target:  5'- gGCUCCGGCGGCGgCg----GCGGCu- -3'
miRNA:   3'- -CGAGGCCGCCGCgGgcucaCGCCGcg -5'
7656 3' -64.9 NC_001973.1 + 16950 0.69 0.356505
Target:  5'- uUUCCGcgaaGCGGCcguGCCCGAGUuuuuggucgugGCGGcCGCg -3'
miRNA:   3'- cGAGGC----CGCCG---CGGGCUCA-----------CGCC-GCG- -5'
7656 3' -64.9 NC_001973.1 + 46378 0.7 0.3492
Target:  5'- ---aCGGUGGUuCCUGAGggauuUGCGGCGCg -3'
miRNA:   3'- cgagGCCGCCGcGGGCUC-----ACGCCGCG- -5'
7656 3' -64.9 NC_001973.1 + 42582 0.7 0.341289
Target:  5'- cGUggCUGaCGGUGCUCGccaaggaGGUGCGGCGCg -3'
miRNA:   3'- -CGa-GGCcGCCGCGGGC-------UCACGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.