miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 5' -54.2 NC_001973.1 + 145050 1.09 0.004381
Target:  5'- cGAGCGCCGACUCGGAACACGUCAAGAg -3'
miRNA:   3'- -CUCGCGGCUGAGCCUUGUGCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 96836 0.83 0.229185
Target:  5'- cGGCGCCGACUaucaaaacuUGGAGCACGUgCAGGAa -3'
miRNA:   3'- cUCGCGGCUGA---------GCCUUGUGCA-GUUCU- -5'
7656 5' -54.2 NC_001973.1 + 83945 0.82 0.240639
Target:  5'- -cGCGCCG-CUCGGAggcggGCGCGUCGAGGc -3'
miRNA:   3'- cuCGCGGCuGAGCCU-----UGUGCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 43007 0.77 0.461698
Target:  5'- cGAGCGCCGACUCGc--CGCGUCGc-- -3'
miRNA:   3'- -CUCGCGGCUGAGCcuuGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 62921 0.74 0.599913
Target:  5'- cGAGCGCCGAuucgaCUCGGGccgGCGuCGUCAguAGAc -3'
miRNA:   3'- -CUCGCGGCU-----GAGCCU---UGU-GCAGU--UCU- -5'
7656 5' -54.2 NC_001973.1 + 36851 0.74 0.630732
Target:  5'- uGAGgGCCGACUCGGcGCGCGcUCu--- -3'
miRNA:   3'- -CUCgCGGCUGAGCCuUGUGC-AGuucu -5'
7656 5' -54.2 NC_001973.1 + 111076 0.74 0.630732
Target:  5'- cGGCGCCcGACgUGGGcCGCGUCGAGGa -3'
miRNA:   3'- cUCGCGG-CUGaGCCUuGUGCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 69404 0.73 0.661558
Target:  5'- cGGCGCCGugUCGGAGgACG-CAu-- -3'
miRNA:   3'- cUCGCGGCugAGCCUUgUGCaGUucu -5'
7656 5' -54.2 NC_001973.1 + 101026 0.73 0.682004
Target:  5'- uGGCGCCGcuCUCGauGAGCGCGUCGAa- -3'
miRNA:   3'- cUCGCGGCu-GAGC--CUUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 21228 0.72 0.712337
Target:  5'- --aUGCCGaACUCGGuggauuuuACGCGUCGAGAu -3'
miRNA:   3'- cucGCGGC-UGAGCCu-------UGUGCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 122622 0.72 0.722323
Target:  5'- cGGCGCCGACgCGG-GCGCcggcgucgGUCGAGAg -3'
miRNA:   3'- cUCGCGGCUGaGCCuUGUG--------CAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 29967 0.71 0.789507
Target:  5'- aGAGaCGCCGGCUCGGuggugGGCGCGUa---- -3'
miRNA:   3'- -CUC-GCGGCUGAGCC-----UUGUGCAguucu -5'
7656 5' -54.2 NC_001973.1 + 67448 0.71 0.798606
Target:  5'- cGGGCaCCgGGCUCGcGGACGCGUCGAu- -3'
miRNA:   3'- -CUCGcGG-CUGAGC-CUUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 52167 0.71 0.798606
Target:  5'- uGGGCGCCGuACUUGGcgacgAGCGCGgCGGGGu -3'
miRNA:   3'- -CUCGCGGC-UGAGCC-----UUGUGCaGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 113940 0.7 0.816338
Target:  5'- cGAGCaugcacacgaGCCGGCUCGcGAGCACG-CAAu- -3'
miRNA:   3'- -CUCG----------CGGCUGAGC-CUUGUGCaGUUcu -5'
7656 5' -54.2 NC_001973.1 + 152883 0.7 0.824955
Target:  5'- -uGCGCCuGAacgugcUGGAGCACGUCAAGu -3'
miRNA:   3'- cuCGCGG-CUga----GCCUUGUGCAGUUCu -5'
7656 5' -54.2 NC_001973.1 + 28999 0.7 0.833394
Target:  5'- aGGGCGCCGGCggcUGGGcacagcACGCGUCGcGGu -3'
miRNA:   3'- -CUCGCGGCUGa--GCCU------UGUGCAGUuCU- -5'
7656 5' -54.2 NC_001973.1 + 121651 0.7 0.841649
Target:  5'- -cGCGCCGcCUCGaaGGGCGCGUCGc-- -3'
miRNA:   3'- cuCGCGGCuGAGC--CUUGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 121226 0.69 0.849712
Target:  5'- cGAGCGCC-ACgcggCGGcgcGGCGCGUCGcAGAa -3'
miRNA:   3'- -CUCGCGGcUGa---GCC---UUGUGCAGU-UCU- -5'
7656 5' -54.2 NC_001973.1 + 113898 0.68 0.900234
Target:  5'- ---aGCCGGCUCGcGAGCACGgcacgCAaaGGAa -3'
miRNA:   3'- cucgCGGCUGAGC-CUUGUGCa----GU--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.