miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7656 5' -54.2 NC_001973.1 + 21228 0.72 0.712337
Target:  5'- --aUGCCGaACUCGGuggauuuuACGCGUCGAGAu -3'
miRNA:   3'- cucGCGGC-UGAGCCu-------UGUGCAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 23084 0.66 0.952571
Target:  5'- uGGCGCUGcGCUCGGccgaagAGCGCGcCGAGc -3'
miRNA:   3'- cUCGCGGC-UGAGCC------UUGUGCaGUUCu -5'
7656 5' -54.2 NC_001973.1 + 26171 0.66 0.963676
Target:  5'- --cCGCCGGCgCGG-GCGCGUCGAc- -3'
miRNA:   3'- cucGCGGCUGaGCCuUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 28999 0.7 0.833394
Target:  5'- aGGGCGCCGGCggcUGGGcacagcACGCGUCGcGGu -3'
miRNA:   3'- -CUCGCGGCUGa--GCCU------UGUGCAGUuCU- -5'
7656 5' -54.2 NC_001973.1 + 29967 0.71 0.789507
Target:  5'- aGAGaCGCCGGCUCGGuggugGGCGCGUa---- -3'
miRNA:   3'- -CUC-GCGGCUGAGCC-----UUGUGCAguucu -5'
7656 5' -54.2 NC_001973.1 + 31508 0.66 0.966935
Target:  5'- cGGCGCCGuCcgCGGGccaaauuuuGCGCGUCAu-- -3'
miRNA:   3'- cUCGCGGCuGa-GCCU---------UGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 36851 0.74 0.630732
Target:  5'- uGAGgGCCGACUCGGcGCGCGcUCu--- -3'
miRNA:   3'- -CUCgCGGCUGAGCCuUGUGC-AGuucu -5'
7656 5' -54.2 NC_001973.1 + 41746 0.66 0.963676
Target:  5'- -uGCGCCaACUCGauaagcGAcguGCACGUCAAGc -3'
miRNA:   3'- cuCGCGGcUGAGC------CU---UGUGCAGUUCu -5'
7656 5' -54.2 NC_001973.1 + 43007 0.77 0.461698
Target:  5'- cGAGCGCCGACUCGc--CGCGUCGc-- -3'
miRNA:   3'- -CUCGCGGCUGAGCcuuGUGCAGUucu -5'
7656 5' -54.2 NC_001973.1 + 45277 0.66 0.966935
Target:  5'- uAGCGCgGAucCUCGGcgauGCACGUCcacugguuGAGAc -3'
miRNA:   3'- cUCGCGgCU--GAGCCu---UGUGCAG--------UUCU- -5'
7656 5' -54.2 NC_001973.1 + 45601 0.67 0.929404
Target:  5'- -cGuCGCCGg--CGGAGCGCGUCGGcGAu -3'
miRNA:   3'- cuC-GCGGCugaGCCUUGUGCAGUU-CU- -5'
7656 5' -54.2 NC_001973.1 + 48940 0.66 0.966935
Target:  5'- -uGCGCCGAagCGGuucgcaAACACGUCGAu- -3'
miRNA:   3'- cuCGCGGCUgaGCC------UUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 49996 0.68 0.900234
Target:  5'- uGAGCGUCGACUCGGuuCACa------ -3'
miRNA:   3'- -CUCGCGGCUGAGCCuuGUGcaguucu -5'
7656 5' -54.2 NC_001973.1 + 52167 0.71 0.798606
Target:  5'- uGGGCGCCGuACUUGGcgacgAGCGCGgCGGGGu -3'
miRNA:   3'- -CUCGCGGC-UGAGCC-----UUGUGCaGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 56335 0.66 0.960199
Target:  5'- cGGCGCCGcGCUCGcGGcCGCGcUCGGGc -3'
miRNA:   3'- cUCGCGGC-UGAGC-CUuGUGC-AGUUCu -5'
7656 5' -54.2 NC_001973.1 + 62921 0.74 0.599913
Target:  5'- cGAGCGCCGAuucgaCUCGGGccgGCGuCGUCAguAGAc -3'
miRNA:   3'- -CUCGCGGCU-----GAGCCU---UGU-GCAGU--UCU- -5'
7656 5' -54.2 NC_001973.1 + 66389 0.68 0.906546
Target:  5'- cAGCGCCGACUCGaccaaGAGCAacgcCGUCu--- -3'
miRNA:   3'- cUCGCGGCUGAGC-----CUUGU----GCAGuucu -5'
7656 5' -54.2 NC_001973.1 + 66959 0.66 0.956499
Target:  5'- -uGCGCCGACUUcaaGaAGCGCuUCAGGAa -3'
miRNA:   3'- cuCGCGGCUGAG---CcUUGUGcAGUUCU- -5'
7656 5' -54.2 NC_001973.1 + 67448 0.71 0.798606
Target:  5'- cGGGCaCCgGGCUCGcGGACGCGUCGAu- -3'
miRNA:   3'- -CUCGcGG-CUGAGC-CUUGUGCAGUUcu -5'
7656 5' -54.2 NC_001973.1 + 69146 0.66 0.956499
Target:  5'- cGAGCGCaUGACUUGGGA-GCGUUAc-- -3'
miRNA:   3'- -CUCGCG-GCUGAGCCUUgUGCAGUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.