miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 3' -68.4 NC_001973.1 + 144370 1.08 0.000319
Target:  5'- aGCCGCCGCCGCCGCCGCCGCCGACCAu -3'
miRNA:   3'- -CGGCGGCGGCGGCGGCGGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 119452 0.91 0.006887
Target:  5'- cGCCGCgccCGCCGCCGCCGCCGCCGAgCCc -3'
miRNA:   3'- -CGGCG---GCGGCGGCGGCGGCGGCU-GGu -5'
7657 3' -68.4 NC_001973.1 + 1217 0.9 0.007622
Target:  5'- aGUCGCCGCCGCCGCCGCCGCCcaaGGCUc -3'
miRNA:   3'- -CGGCGGCGGCGGCGGCGGCGG---CUGGu -5'
7657 3' -68.4 NC_001973.1 + 29149 0.9 0.008017
Target:  5'- aGCCuCCGCCGCCGCCGCCGCCG-CCu -3'
miRNA:   3'- -CGGcGGCGGCGGCGGCGGCGGCuGGu -5'
7657 3' -68.4 NC_001973.1 + 28428 0.89 0.009332
Target:  5'- gGCgGCCGCgGCCGCCGCCGCCG-CCAc -3'
miRNA:   3'- -CGgCGGCGgCGGCGGCGGCGGCuGGU- -5'
7657 3' -68.4 NC_001973.1 + 32558 0.89 0.009571
Target:  5'- cGCCGCCGCCGaCGCCGCCGUCGGCUc -3'
miRNA:   3'- -CGGCGGCGGCgGCGGCGGCGGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 82968 0.88 0.012016
Target:  5'- cGUCGCCGCCGCCGCCGCCcaagGCCGAUg- -3'
miRNA:   3'- -CGGCGGCGGCGGCGGCGG----CGGCUGgu -5'
7657 3' -68.4 NC_001973.1 + 46458 0.87 0.012639
Target:  5'- cGCCGCCGCUuCCGCCGCCGCCG-CCu -3'
miRNA:   3'- -CGGCGGCGGcGGCGGCGGCGGCuGGu -5'
7657 3' -68.4 NC_001973.1 + 156098 0.84 0.020924
Target:  5'- aGCCGCaGCCGCCGCCGCCGCCauuuCCu -3'
miRNA:   3'- -CGGCGgCGGCGGCGGCGGCGGcu--GGu -5'
7657 3' -68.4 NC_001973.1 + 109506 0.84 0.021456
Target:  5'- cGCCGCCGCCGCCGuUCGCCGCUuGGCUc -3'
miRNA:   3'- -CGGCGGCGGCGGC-GGCGGCGG-CUGGu -5'
7657 3' -68.4 NC_001973.1 + 71714 0.83 0.028067
Target:  5'- aCCGgCGCCGCCGCCGCCGCgcccccggcgcccgCGGCCGc -3'
miRNA:   3'- cGGCgGCGGCGGCGGCGGCG--------------GCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 118162 0.82 0.030485
Target:  5'- aGCUGCagCGCggacgCGCCGCCGCCGCCGAUCAg -3'
miRNA:   3'- -CGGCG--GCG-----GCGGCGGCGGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 25667 0.82 0.032049
Target:  5'- aGCCGUCGCCGaaGCCGUCGCCGaaGCCGu -3'
miRNA:   3'- -CGGCGGCGGCggCGGCGGCGGC--UGGU- -5'
7657 3' -68.4 NC_001973.1 + 77288 0.81 0.034543
Target:  5'- -aCGCCGCCuCCGCCGCCGCCGAg-- -3'
miRNA:   3'- cgGCGGCGGcGGCGGCGGCGGCUggu -5'
7657 3' -68.4 NC_001973.1 + 113683 0.81 0.037136
Target:  5'- cGCCGCCGCCGCCGCCuucuccucgacgcGUCGCCG-CUu -3'
miRNA:   3'- -CGGCGGCGGCGGCGG-------------CGGCGGCuGGu -5'
7657 3' -68.4 NC_001973.1 + 158613 0.81 0.039131
Target:  5'- uCCGCCuCCGCCGuuGCCGCCGcCCGg -3'
miRNA:   3'- cGGCGGcGGCGGCggCGGCGGCuGGU- -5'
7657 3' -68.4 NC_001973.1 + 158531 0.79 0.052712
Target:  5'- cGCCGCCGCCaCCGCCuccuccgccuccGCCGCC-ACCAc -3'
miRNA:   3'- -CGGCGGCGGcGGCGG------------CGGCGGcUGGU- -5'
7657 3' -68.4 NC_001973.1 + 25703 0.78 0.059638
Target:  5'- aGCCGUCGCCgaagccuugcgcGCCGCCcgcGCCGCCGGCgCGg -3'
miRNA:   3'- -CGGCGGCGG------------CGGCGG---CGGCGGCUG-GU- -5'
7657 3' -68.4 NC_001973.1 + 82881 0.78 0.06173
Target:  5'- cGCCuCCGCCGCCcuucuuucccgucgcGCCGCCGCgccCGACCGa -3'
miRNA:   3'- -CGGcGGCGGCGG---------------CGGCGGCG---GCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 77370 0.78 0.062649
Target:  5'- gGCCGCgCGcCCGCgCGCCGgCGCCGACg- -3'
miRNA:   3'- -CGGCG-GC-GGCG-GCGGCgGCGGCUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.