miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7657 3' -68.4 NC_001973.1 + 1217 0.9 0.007622
Target:  5'- aGUCGCCGCCGCCGCCGCCGCCcaaGGCUc -3'
miRNA:   3'- -CGGCGGCGGCGGCGGCGGCGG---CUGGu -5'
7657 3' -68.4 NC_001973.1 + 2603 0.67 0.327785
Target:  5'- -gCGaCCGCCcgaagaaaacuaagcGCCgGCCGCgGCCGAUCGu -3'
miRNA:   3'- cgGC-GGCGG---------------CGG-CGGCGgCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 2892 0.68 0.318387
Target:  5'- cGCgCGUCGUCGCgcuuUGCuCGCCGCgCGAUCGu -3'
miRNA:   3'- -CG-GCGGCGGCG----GCG-GCGGCG-GCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 3378 0.7 0.240768
Target:  5'- cGUCGCCGUgGuuGCCGagCGCC-ACCAa -3'
miRNA:   3'- -CGGCGGCGgCggCGGCg-GCGGcUGGU- -5'
7657 3' -68.4 NC_001973.1 + 3773 0.66 0.374819
Target:  5'- cGCgCGCgCGCC-CCGUCcacgGCCGCCGcgcacACCAa -3'
miRNA:   3'- -CG-GCG-GCGGcGGCGG----CGGCGGC-----UGGU- -5'
7657 3' -68.4 NC_001973.1 + 4927 0.66 0.382333
Target:  5'- -aCGUCGgCGggcUCGUCGCCGaCCGGCCGg -3'
miRNA:   3'- cgGCGGCgGC---GGCGGCGGC-GGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 5329 0.72 0.156293
Target:  5'- uGCCGUCGCUGUgCGCCGCCagGuaGGCCAc -3'
miRNA:   3'- -CGGCGGCGGCG-GCGGCGG--CggCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 5533 0.68 0.286486
Target:  5'- aCCGuuGuuGCaCGCCGCCGUUggagacguggGACCGu -3'
miRNA:   3'- cGGCggCggCG-GCGGCGGCGG----------CUGGU- -5'
7657 3' -68.4 NC_001973.1 + 6427 0.67 0.338775
Target:  5'- gGCgCGCCGacgagcgcgcCCGUCGCCGgaGCCGugCu -3'
miRNA:   3'- -CG-GCGGC----------GGCGGCGGCggCGGCugGu -5'
7657 3' -68.4 NC_001973.1 + 6984 0.71 0.192353
Target:  5'- gGCCGCCGCgGCaaaaCGCCGCCaugacuuUCGGCCu -3'
miRNA:   3'- -CGGCGGCGgCG----GCGGCGGc------GGCUGGu -5'
7657 3' -68.4 NC_001973.1 + 7632 0.66 0.389946
Target:  5'- aGCUG-CGCgCGCuCGCCGCCaGCgGGCUc -3'
miRNA:   3'- -CGGCgGCG-GCG-GCGGCGG-CGgCUGGu -5'
7657 3' -68.4 NC_001973.1 + 8214 0.69 0.246132
Target:  5'- cGCCGCUggGCCGCCaaGCCGCgagaggUGCUGAuCCGa -3'
miRNA:   3'- -CGGCGG--CGGCGG--CGGCG------GCGGCU-GGU- -5'
7657 3' -68.4 NC_001973.1 + 8430 0.77 0.068609
Target:  5'- aGCCGCCGCguCGUCGCgcccgucgacgaacCGCuCGCCGACCAc -3'
miRNA:   3'- -CGGCGGCG--GCGGCG--------------GCG-GCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 8612 0.73 0.129495
Target:  5'- gGCCG-CGCCGCgGacgaCGCCGCCGagGCCGa -3'
miRNA:   3'- -CGGCgGCGGCGgCg---GCGGCGGC--UGGU- -5'
7657 3' -68.4 NC_001973.1 + 8836 0.67 0.345778
Target:  5'- cCCGCCGUC-CCG-CGCUGCUGGCgCGg -3'
miRNA:   3'- cGGCGGCGGcGGCgGCGGCGGCUG-GU- -5'
7657 3' -68.4 NC_001973.1 + 10183 0.66 0.42137
Target:  5'- cCCGCaCGaaGCCGUCGCgGCaCGGCg- -3'
miRNA:   3'- cGGCG-GCggCGGCGGCGgCG-GCUGgu -5'
7657 3' -68.4 NC_001973.1 + 11654 0.66 0.389946
Target:  5'- aCCGCUugGCCGCuggcauuuCGCUGgCGCUGAUCAg -3'
miRNA:   3'- cGGCGG--CGGCG--------GCGGCgGCGGCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 14613 0.67 0.345778
Target:  5'- gGCCGCC-CgGCUGUCGgUGCgCGACUAc -3'
miRNA:   3'- -CGGCGGcGgCGGCGGCgGCG-GCUGGU- -5'
7657 3' -68.4 NC_001973.1 + 14662 0.7 0.235502
Target:  5'- gGCCGCuCGuCCGcCCGCCGCCcgguGCUGuucgacaucGCCAa -3'
miRNA:   3'- -CGGCG-GC-GGC-GGCGGCGG----CGGC---------UGGU- -5'
7657 3' -68.4 NC_001973.1 + 17271 0.68 0.284654
Target:  5'- gGCCGCgcacucgggcaucgCGUCGUaCGCCGCCucCCGGCCGc -3'
miRNA:   3'- -CGGCG--------------GCGGCG-GCGGCGGc-GGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.