Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7657 | 5' | -51.1 | NC_001973.1 | + | 144405 | 1.1 | 0.008298 |
Target: 5'- gCGCGACAGAACGACUUCAACACCCAGa -3' miRNA: 3'- -GCGCUGUCUUGCUGAAGUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 138454 | 0.66 | 0.992739 |
Target: 5'- gCGCGuCAGAu--GCUccCGACACCCGGc -3' miRNA: 3'- -GCGCuGUCUugcUGAa-GUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 132494 | 0.67 | 0.987658 |
Target: 5'- aCGCGAcCAGccCGGC--CAACGCCCAc -3' miRNA: 3'- -GCGCU-GUCuuGCUGaaGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 131780 | 0.66 | 0.991315 |
Target: 5'- aCGaCGGCGGc-CGGCUcggugaaggggccgUCGACGCCCAa -3' miRNA: 3'- -GC-GCUGUCuuGCUGA--------------AGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 124127 | 0.67 | 0.98913 |
Target: 5'- uCGCG-CGcGAACGGCUggAGCACCUg- -3' miRNA: 3'- -GCGCuGU-CUUGCUGAagUUGUGGGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 119307 | 0.69 | 0.969774 |
Target: 5'- uCGCGuucaAGAGCGGg-UCGGCGCCCGc -3' miRNA: 3'- -GCGCug--UCUUGCUgaAGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 111937 | 0.71 | 0.922515 |
Target: 5'- gCGCGGCG--GCGACUUCucCgACCCGGc -3' miRNA: 3'- -GCGCUGUcuUGCUGAAGuuG-UGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 109807 | 0.66 | 0.991662 |
Target: 5'- uGCGuGCucGugGugUUCGGCACCCGa -3' miRNA: 3'- gCGC-UGucUugCugAAGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 109625 | 0.67 | 0.990462 |
Target: 5'- -aUGACGGAcguggugcGCGACUUCGACGCgCu- -3' miRNA: 3'- gcGCUGUCU--------UGCUGAAGUUGUGgGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 95863 | 0.66 | 0.994561 |
Target: 5'- aCGUGGgAGGACGGCguggUCGACuACCgCGa -3' miRNA: 3'- -GCGCUgUCUUGCUGa---AGUUG-UGG-GUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 95033 | 0.66 | 0.994561 |
Target: 5'- uGCGGCgGGGACGGCaUCAACGa-CAGc -3' miRNA: 3'- gCGCUG-UCUUGCUGaAGUUGUggGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 94794 | 0.67 | 0.990462 |
Target: 5'- uGCaACGcGGACGGCUgucggUCAGCGCCCc- -3' miRNA: 3'- gCGcUGU-CUUGCUGA-----AGUUGUGGGuc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 84279 | 0.68 | 0.975381 |
Target: 5'- gCGCGACAaagaggaccucGAACGGCgcaCGGCcgcguccgccGCCCAGg -3' miRNA: 3'- -GCGCUGU-----------CUUGCUGaa-GUUG----------UGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 83137 | 0.74 | 0.793154 |
Target: 5'- gGCGcucaAGAACGACUaCGACACCCuGa -3' miRNA: 3'- gCGCug--UCUUGCUGAaGUUGUGGGuC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 79986 | 0.66 | 0.992739 |
Target: 5'- uGCcgGGCAGAAag---UCGACGCCCGGg -3' miRNA: 3'- gCG--CUGUCUUgcugaAGUUGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 73775 | 0.67 | 0.990335 |
Target: 5'- aCGCGGCGGGgaacucgaGCGAgUUCGccaggcucucgacGCGCUCGGu -3' miRNA: 3'- -GCGCUGUCU--------UGCUgAAGU-------------UGUGGGUC- -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 70102 | 0.67 | 0.986037 |
Target: 5'- gCGCGAgCGcGAACG-CcUCGGCGCCCGc -3' miRNA: 3'- -GCGCU-GU-CUUGCuGaAGUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 59834 | 0.67 | 0.98913 |
Target: 5'- gCGCGACA--ACGccgcGCUggcCAGCGCCCAc -3' miRNA: 3'- -GCGCUGUcuUGC----UGAa--GUUGUGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 52189 | 0.67 | 0.990462 |
Target: 5'- gCGCGGCGGGgucgcGCGACUcgagCAGCgACUCGa -3' miRNA: 3'- -GCGCUGUCU-----UGCUGAa---GUUG-UGGGUc -5' |
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7657 | 5' | -51.1 | NC_001973.1 | + | 51523 | 0.7 | 0.943097 |
Target: 5'- cCGCGGCGGcugucGGCGAUaaauUUCAuguuaauucGCGCCCGGg -3' miRNA: 3'- -GCGCUGUC-----UUGCUG----AAGU---------UGUGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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