miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7658 5' -63.5 NC_001973.1 + 143601 1.09 0.00067
Target:  5'- uGCACCACGGCCAGGCCCAGGCUCGCGu -3'
miRNA:   3'- -CGUGGUGCCGGUCCGGGUCCGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 67439 0.81 0.064267
Target:  5'- cGCGCa--GGUCGGGCaCCGGGCUCGCGg -3'
miRNA:   3'- -CGUGgugCCGGUCCG-GGUCCGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 20091 0.77 0.136452
Target:  5'- aGCA-CACGGCCAGGCUguGGCacagcCGCGg -3'
miRNA:   3'- -CGUgGUGCCGGUCCGGguCCGa----GCGC- -5'
7658 5' -63.5 NC_001973.1 + 128129 0.77 0.136452
Target:  5'- aGCA-CACGGCCAGGCUguGGCacagcCGCGg -3'
miRNA:   3'- -CGUgGUGCCGGUCCGGguCCGa----GCGC- -5'
7658 5' -63.5 NC_001973.1 + 150200 0.76 0.1618
Target:  5'- -gGCCGCGGCUcGGCCUcGGCUUGCu -3'
miRNA:   3'- cgUGGUGCCGGuCCGGGuCCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 86834 0.75 0.169786
Target:  5'- cUACaACGGCCggugucgcgAGGCCCAGuGCUCGCGc -3'
miRNA:   3'- cGUGgUGCCGG---------UCCGGGUC-CGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 1829 0.75 0.182427
Target:  5'- cGCGCaCACGGCCAGGCUguGGCacaggUUGgGg -3'
miRNA:   3'- -CGUG-GUGCCGGUCCGGguCCG-----AGCgC- -5'
7658 5' -63.5 NC_001973.1 + 27867 0.75 0.186822
Target:  5'- -gGCCGCGGCCgcGGGCgCGGGCgCGCu -3'
miRNA:   3'- cgUGGUGCCGG--UCCGgGUCCGaGCGc -5'
7658 5' -63.5 NC_001973.1 + 45831 0.74 0.191311
Target:  5'- uGCGCCggcGCGGCguucgUGGGCCUGGGCgUCGCGg -3'
miRNA:   3'- -CGUGG---UGCCG-----GUCCGGGUCCG-AGCGC- -5'
7658 5' -63.5 NC_001973.1 + 35667 0.74 0.191311
Target:  5'- uGCACCACGGCgC-GGCCgAcGGCggCGCGg -3'
miRNA:   3'- -CGUGGUGCCG-GuCCGGgU-CCGa-GCGC- -5'
7658 5' -63.5 NC_001973.1 + 55886 0.74 0.215193
Target:  5'- -gACCgGCGGCggCAGGCUCGGGCUCGgGc -3'
miRNA:   3'- cgUGG-UGCCG--GUCCGGGUCCGAGCgC- -5'
7658 5' -63.5 NC_001973.1 + 34012 0.74 0.215193
Target:  5'- cGCGucguCCACGGCCcGGUCgAGGUUCGUGu -3'
miRNA:   3'- -CGU----GGUGCCGGuCCGGgUCCGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 36316 0.74 0.220266
Target:  5'- gGCGCCGCGGCCGacgcGGCCgacgCGGGcCUCgGCGu -3'
miRNA:   3'- -CGUGGUGCCGGU----CCGG----GUCC-GAG-CGC- -5'
7658 5' -63.5 NC_001973.1 + 56372 0.72 0.258684
Target:  5'- gGCGCCGCGcucggcGCCAGGCUCgguaucGGGCUCGa- -3'
miRNA:   3'- -CGUGGUGC------CGGUCCGGG------UCCGAGCgc -5'
7658 5' -63.5 NC_001973.1 + 46098 0.71 0.295825
Target:  5'- uGCGCUACGGCCGcGuGCCCGcgcuggacgcgcGGCUgCGCa -3'
miRNA:   3'- -CGUGGUGCCGGU-C-CGGGU------------CCGA-GCGc -5'
7658 5' -63.5 NC_001973.1 + 63620 0.71 0.302404
Target:  5'- cGCGCgCACGGCCAaaucGGCCgCgugGGGCggCGCGc -3'
miRNA:   3'- -CGUG-GUGCCGGU----CCGG-G---UCCGa-GCGC- -5'
7658 5' -63.5 NC_001973.1 + 69927 0.71 0.315213
Target:  5'- cCGCCGCGGCgcgugagCAGGCCCcuGC-CGCGc -3'
miRNA:   3'- cGUGGUGCCG-------GUCCGGGucCGaGCGC- -5'
7658 5' -63.5 NC_001973.1 + 109195 0.71 0.315898
Target:  5'- cGCGCCGCGcaGCC-GGCCCAgcucGGCcucgaUCGCGu -3'
miRNA:   3'- -CGUGGUGC--CGGuCCGGGU----CCG-----AGCGC- -5'
7658 5' -63.5 NC_001973.1 + 133056 0.71 0.336983
Target:  5'- uGCACCAUGGCC--GCCUugaAGGuCUCGCc -3'
miRNA:   3'- -CGUGGUGCCGGucCGGG---UCC-GAGCGc -5'
7658 5' -63.5 NC_001973.1 + 21274 0.7 0.350857
Target:  5'- -aGCCGCGGCguccgcCGGGCCgucgcucagucguCGGGCUUGCGc -3'
miRNA:   3'- cgUGGUGCCG------GUCCGG-------------GUCCGAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.