miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7658 5' -63.5 NC_001973.1 + 1222 0.66 0.55808
Target:  5'- cCGCCGCcGCCGccGCCCaAGGCUcCGCGc -3'
miRNA:   3'- cGUGGUGcCGGUc-CGGG-UCCGA-GCGC- -5'
7658 5' -63.5 NC_001973.1 + 1829 0.75 0.182427
Target:  5'- cGCGCaCACGGCCAGGCUguGGCacaggUUGgGg -3'
miRNA:   3'- -CGUG-GUGCCGGUCCGGguCCG-----AGCgC- -5'
7658 5' -63.5 NC_001973.1 + 5139 0.7 0.381372
Target:  5'- uGCACC-CGGCCguggugcAGGCCCAgcuGGUUgGUGu -3'
miRNA:   3'- -CGUGGuGCCGG-------UCCGGGU---CCGAgCGC- -5'
7658 5' -63.5 NC_001973.1 + 10521 0.66 0.586858
Target:  5'- aGCGCCA-GGCaguaggaGGaGCCC-GGCUCGaCGa -3'
miRNA:   3'- -CGUGGUgCCGg------UC-CGGGuCCGAGC-GC- -5'
7658 5' -63.5 NC_001973.1 + 10749 0.67 0.539116
Target:  5'- cGCAUCAgCGGCgGGuGCgcgaCGGGCUCGUc -3'
miRNA:   3'- -CGUGGU-GCCGgUC-CGg---GUCCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 11280 0.66 0.596518
Target:  5'- cGCGCaCACGGCCaagcuguggcacAGGUUgGGGUUCGa- -3'
miRNA:   3'- -CGUG-GUGCCGG------------UCCGGgUCCGAGCgc -5'
7658 5' -63.5 NC_001973.1 + 13437 0.66 0.567634
Target:  5'- cGCAacaucgaCGCGGCCAGcGUCguGGCggaggccaCGCGg -3'
miRNA:   3'- -CGUg------GUGCCGGUC-CGGguCCGa-------GCGC- -5'
7658 5' -63.5 NC_001973.1 + 16903 0.67 0.548573
Target:  5'- cGCGCCgGCGGCgGcGGCCUcucGGCggCGCa -3'
miRNA:   3'- -CGUGG-UGCCGgU-CCGGGu--CCGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 17264 0.67 0.520377
Target:  5'- cCGCgGCGGCCGcGCaCuCGGGCaUCGCGu -3'
miRNA:   3'- cGUGgUGCCGGUcCG-G-GUCCG-AGCGC- -5'
7658 5' -63.5 NC_001973.1 + 18269 0.68 0.483712
Target:  5'- gGCGCaCACGGCCgacgaGGGCaCCAGcGCcaCGCu -3'
miRNA:   3'- -CGUG-GUGCCGG-----UCCG-GGUC-CGa-GCGc -5'
7658 5' -63.5 NC_001973.1 + 18371 0.66 0.606201
Target:  5'- cGCGCaaaacuCGGCCGgcguuucgccGGCCCucaucauucGGCUCGCc -3'
miRNA:   3'- -CGUGgu----GCCGGU----------CCGGGu--------CCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 20091 0.77 0.136452
Target:  5'- aGCA-CACGGCCAGGCUguGGCacagcCGCGg -3'
miRNA:   3'- -CGUgGUGCCGGUCCGGguCCGa----GCGC- -5'
7658 5' -63.5 NC_001973.1 + 21274 0.7 0.350857
Target:  5'- -aGCCGCGGCguccgcCGGGCCgucgcucagucguCGGGCUUGCGc -3'
miRNA:   3'- cgUGGUGCCG------GUCCGG-------------GUCCGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 23701 0.68 0.439713
Target:  5'- cGCGCCagcuGCGcGCCAaGCCgCuGGGCUCGCu -3'
miRNA:   3'- -CGUGG----UGC-CGGUcCGG-G-UCCGAGCGc -5'
7658 5' -63.5 NC_001973.1 + 25931 0.67 0.548573
Target:  5'- cCGCCGCGGgCGGGCUCGcGGC-CGa- -3'
miRNA:   3'- cGUGGUGCCgGUCCGGGU-CCGaGCgc -5'
7658 5' -63.5 NC_001973.1 + 27867 0.75 0.186822
Target:  5'- -gGCCGCGGCCgcGGGCgCGGGCgCGCu -3'
miRNA:   3'- cgUGGUGCCGG--UCCGgGUCCGaGCGc -5'
7658 5' -63.5 NC_001973.1 + 29001 0.7 0.374354
Target:  5'- gGCGCCgGCGGCUGGGCaCAGcacGCgUCGCGg -3'
miRNA:   3'- -CGUGG-UGCCGGUCCGgGUC---CG-AGCGC- -5'
7658 5' -63.5 NC_001973.1 + 30069 0.66 0.55808
Target:  5'- --uCCACGGCCuGGCCCu-GCgCGCc -3'
miRNA:   3'- cguGGUGCCGGuCCGGGucCGaGCGc -5'
7658 5' -63.5 NC_001973.1 + 34012 0.74 0.215193
Target:  5'- cGCGucguCCACGGCCcGGUCgAGGUUCGUGu -3'
miRNA:   3'- -CGU----GGUGCCGGuCCGGgUCCGAGCGC- -5'
7658 5' -63.5 NC_001973.1 + 34311 0.68 0.489135
Target:  5'- uGCGCCGCGGCgccaaCGGGUCCuuGGUguugagcucccagCGCGa -3'
miRNA:   3'- -CGUGGUGCCG-----GUCCGGGu-CCGa------------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.