miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7660 3' -60.4 NC_001973.1 + 87694 0.66 0.769981
Target:  5'- gCUgCUCGGa-CAgGUCGAUGAGCCGg -3'
miRNA:   3'- aGGgGAGCCacGUgCGGUUGCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 26169 0.66 0.751651
Target:  5'- uUCCgCCggcgCGG-GCGCGUCGACGGcGCUc -3'
miRNA:   3'- -AGG-GGa---GCCaCGUGCGGUUGCU-CGGc -5'
7660 3' -60.4 NC_001973.1 + 105952 0.66 0.751651
Target:  5'- cUUCUUCaGGUGCACGUaGGCGAGCa- -3'
miRNA:   3'- aGGGGAG-CCACGUGCGgUUGCUCGgc -5'
7660 3' -60.4 NC_001973.1 + 58759 0.66 0.742336
Target:  5'- gCCCCUC-GUGgAagagUGCCGGCGcGCCGu -3'
miRNA:   3'- aGGGGAGcCACgU----GCGGUUGCuCGGC- -5'
7660 3' -60.4 NC_001973.1 + 14678 0.66 0.742336
Target:  5'- gCCgCC-CGGUGCuguucgacauCGCCAACGAauggacauuGCCGc -3'
miRNA:   3'- aGG-GGaGCCACGu---------GCGGUUGCU---------CGGC- -5'
7660 3' -60.4 NC_001973.1 + 5924 0.66 0.723445
Target:  5'- gUCgCCCgCGGUcGCGCGCaCGAUGcgcgacgcGGCCGg -3'
miRNA:   3'- -AG-GGGaGCCA-CGUGCG-GUUGC--------UCGGC- -5'
7660 3' -60.4 NC_001973.1 + 96953 0.66 0.722492
Target:  5'- gCCgUUCGacgacugGCGCGCCGacacgcucuacccGCGAGCCGa -3'
miRNA:   3'- aGGgGAGCca-----CGUGCGGU-------------UGCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 73815 0.67 0.694583
Target:  5'- -gCgCUCGGUGCGC-CCGACGaAGgCGa -3'
miRNA:   3'- agGgGAGCCACGUGcGGUUGC-UCgGC- -5'
7660 3' -60.4 NC_001973.1 + 115080 0.67 0.694583
Target:  5'- uUCCggCCUCGGcGUcCGCCGAggcgcgaugucUGAGCCGg -3'
miRNA:   3'- -AGG--GGAGCCaCGuGCGGUU-----------GCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 33646 0.67 0.694583
Target:  5'- aCgCUUUGG-GCGCGUCGucuuCGAGCCGc -3'
miRNA:   3'- aGgGGAGCCaCGUGCGGUu---GCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 24155 0.67 0.694583
Target:  5'- cCCgCCUCGGcgcugGCGCuGCCGcuGCG-GCCGc -3'
miRNA:   3'- aGG-GGAGCCa----CGUG-CGGU--UGCuCGGC- -5'
7660 3' -60.4 NC_001973.1 + 56638 0.67 0.684855
Target:  5'- uUUUCUUCGGcGCG-GCCAaagGCGGGCCGu -3'
miRNA:   3'- -AGGGGAGCCaCGUgCGGU---UGCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 86936 0.68 0.65546
Target:  5'- gCCCa--GGUGCGCguucgucgucaaGCCGACGGcGCCGu -3'
miRNA:   3'- aGGGgagCCACGUG------------CGGUUGCU-CGGC- -5'
7660 3' -60.4 NC_001973.1 + 144034 0.68 0.65546
Target:  5'- -aCCUUCaaaucaUGUcCGCCAACGAGCCGg -3'
miRNA:   3'- agGGGAGcc----ACGuGCGGUUGCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 31974 0.68 0.635763
Target:  5'- --aCCUCGGgcUGCGCGCCGAUcuccGCCGc -3'
miRNA:   3'- aggGGAGCC--ACGUGCGGUUGcu--CGGC- -5'
7660 3' -60.4 NC_001973.1 + 34065 0.68 0.616056
Target:  5'- gCUgCUCGGUGaugaGCGCCAucuuggcggugGCGuAGCCGc -3'
miRNA:   3'- aGGgGAGCCACg---UGCGGU-----------UGC-UCGGC- -5'
7660 3' -60.4 NC_001973.1 + 95825 0.68 0.606216
Target:  5'- -aCCCguucaCGG-GCGCGgCGACGGGCCc -3'
miRNA:   3'- agGGGa----GCCaCGUGCgGUUGCUCGGc -5'
7660 3' -60.4 NC_001973.1 + 144336 0.68 0.606216
Target:  5'- cCCCCgggcaagCGGaUGCGCGaggaCGaggACGAGCCGc -3'
miRNA:   3'- aGGGGa------GCC-ACGUGCg---GU---UGCUCGGC- -5'
7660 3' -60.4 NC_001973.1 + 119896 0.68 0.606216
Target:  5'- gCCCCUUGGagcccggGCACGCUcuCGAuGUCGa -3'
miRNA:   3'- aGGGGAGCCa------CGUGCGGuuGCU-CGGC- -5'
7660 3' -60.4 NC_001973.1 + 59886 0.68 0.606216
Target:  5'- gCCCCaacggcggcgCGGUGUcgGCCAacGCGAGCCa -3'
miRNA:   3'- aGGGGa---------GCCACGugCGGU--UGCUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.