miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7660 5' -57 NC_001973.1 + 87453 0.66 0.880135
Target:  5'- aUG-GGCCCGACggCGcGCAGCa---- -3'
miRNA:   3'- -ACgCCGGGCUGuaGCaCGUCGacuuc -5'
7660 5' -57 NC_001973.1 + 83730 0.66 0.880135
Target:  5'- aGCGGCgCCG-CGUCcgcgacuuggagGUGgAGCUGGAc -3'
miRNA:   3'- aCGCCG-GGCuGUAG------------CACgUCGACUUc -5'
7660 5' -57 NC_001973.1 + 59551 0.66 0.872977
Target:  5'- cGCGGCCaagGGCGUCGcGguGCUc--- -3'
miRNA:   3'- aCGCCGGg--CUGUAGCaCguCGAcuuc -5'
7660 5' -57 NC_001973.1 + 59011 0.66 0.853377
Target:  5'- aGCGGCgCCGACGUguucuuuuccggcgaCG-GCAcGCUGAc- -3'
miRNA:   3'- aCGCCG-GGCUGUA---------------GCaCGU-CGACUuc -5'
7660 5' -57 NC_001973.1 + 84383 0.66 0.85024
Target:  5'- cGCGGCUCaccgacuccucgGACggCGUGCAGUucgacaucuUGAAGc -3'
miRNA:   3'- aCGCCGGG------------CUGuaGCACGUCG---------ACUUC- -5'
7660 5' -57 NC_001973.1 + 7766 0.66 0.85024
Target:  5'- gGCGGCggCGGCGUCGaGgAGCUGGc- -3'
miRNA:   3'- aCGCCGg-GCUGUAGCaCgUCGACUuc -5'
7660 5' -57 NC_001973.1 + 134795 0.66 0.85024
Target:  5'- aUGCGGCCguCGGCGUgGUGCcGCg---- -3'
miRNA:   3'- -ACGCCGG--GCUGUAgCACGuCGacuuc -5'
7660 5' -57 NC_001973.1 + 85159 0.67 0.84226
Target:  5'- cUGCGcGCCCGACugGUCGUaGCGauugucGUUGAAa -3'
miRNA:   3'- -ACGC-CGGGCUG--UAGCA-CGU------CGACUUc -5'
7660 5' -57 NC_001973.1 + 21560 0.67 0.84226
Target:  5'- cGUGGuCCCGGCG-CGcGgGGUUGAAGu -3'
miRNA:   3'- aCGCC-GGGCUGUaGCaCgUCGACUUC- -5'
7660 5' -57 NC_001973.1 + 42880 0.67 0.83409
Target:  5'- gGCGGCgCGugAUC-UGCAGCg---- -3'
miRNA:   3'- aCGCCGgGCugUAGcACGUCGacuuc -5'
7660 5' -57 NC_001973.1 + 88880 0.67 0.83409
Target:  5'- aGCGGCgCCu-CGUCGUGCAGUc---- -3'
miRNA:   3'- aCGCCG-GGcuGUAGCACGUCGacuuc -5'
7660 5' -57 NC_001973.1 + 117806 0.67 0.83409
Target:  5'- cGcCGGCCUGuuccugAUCGUGCAGCcGGAc -3'
miRNA:   3'- aC-GCCGGGCug----UAGCACGUCGaCUUc -5'
7660 5' -57 NC_001973.1 + 103913 0.67 0.825738
Target:  5'- cGCGGCgCGACGaggagcgcgUCGUcGCGGCgcGggGc -3'
miRNA:   3'- aCGCCGgGCUGU---------AGCA-CGUCGa-CuuC- -5'
7660 5' -57 NC_001973.1 + 105364 0.67 0.825738
Target:  5'- aGCGGCgCGgagGCGUCG-GCGGCUuGAc- -3'
miRNA:   3'- aCGCCGgGC---UGUAGCaCGUCGA-CUuc -5'
7660 5' -57 NC_001973.1 + 102445 0.67 0.817211
Target:  5'- aGCGGCUCGAaaagaacUCGcucaacUGCAGCgUGGAGa -3'
miRNA:   3'- aCGCCGGGCUgu-----AGC------ACGUCG-ACUUC- -5'
7660 5' -57 NC_001973.1 + 145012 0.67 0.808517
Target:  5'- gGCGGCuCCGGCGgcgcccgaGUGCGGCgcGAGc -3'
miRNA:   3'- aCGCCG-GGCUGUag------CACGUCGa-CUUc -5'
7660 5' -57 NC_001973.1 + 120403 0.67 0.808517
Target:  5'- cGCcGCCCGACGUCaGgcccCAGCUGGGc -3'
miRNA:   3'- aCGcCGGGCUGUAG-Cac--GUCGACUUc -5'
7660 5' -57 NC_001973.1 + 105486 0.67 0.807639
Target:  5'- aUGUGGCCgGGCG-CGUugccgccGUAGUUGAGGu -3'
miRNA:   3'- -ACGCCGGgCUGUaGCA-------CGUCGACUUC- -5'
7660 5' -57 NC_001973.1 + 40496 0.68 0.790661
Target:  5'- aGCGGCCUGAuCAcCGUGaCGGCgUGGc- -3'
miRNA:   3'- aCGCCGGGCU-GUaGCAC-GUCG-ACUuc -5'
7660 5' -57 NC_001973.1 + 93837 0.68 0.781516
Target:  5'- gUGCcccaacCCCGugGcCGUGUGGCUGAAGg -3'
miRNA:   3'- -ACGcc----GGGCugUaGCACGUCGACUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.