miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7661 3' -53.6 NC_001973.1 + 141078 1.08 0.005804
Target:  5'- cACGCGCAAGCCGAAUCGCGUGUUCGAc -3'
miRNA:   3'- -UGCGCGUUCGGCUUAGCGCACAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 20920 0.81 0.303137
Target:  5'- uGCGCGCGAGCCGA-UUGCGUucugUCGAg -3'
miRNA:   3'- -UGCGCGUUCGGCUuAGCGCAca--AGCU- -5'
7661 3' -53.6 NC_001973.1 + 96033 0.76 0.52642
Target:  5'- cGCGCGCGAGCuCGGGcugggcggucuguUCGCGUGggagaUCGAc -3'
miRNA:   3'- -UGCGCGUUCG-GCUU-------------AGCGCACa----AGCU- -5'
7661 3' -53.6 NC_001973.1 + 114433 0.76 0.556532
Target:  5'- uGCGCGCGAGCCGGcUCGCGaagcuggUGUgcUCGc -3'
miRNA:   3'- -UGCGCGUUCGGCUuAGCGC-------ACA--AGCu -5'
7661 3' -53.6 NC_001973.1 + 144219 0.74 0.66033
Target:  5'- -gGCGCcgAGGCCGAAUCGC-UGgUCGAg -3'
miRNA:   3'- ugCGCG--UUCGGCUUAGCGcACaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 38020 0.74 0.66033
Target:  5'- -aGCGCGAGCaCGAAggGCGUcGUUUGAg -3'
miRNA:   3'- ugCGCGUUCG-GCUUagCGCA-CAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 16045 0.73 0.701248
Target:  5'- cGCGCGCcGGCCGGaguuaauaGUCGUGU-UUCGAu -3'
miRNA:   3'- -UGCGCGuUCGGCU--------UAGCGCAcAAGCU- -5'
7661 3' -53.6 NC_001973.1 + 72495 0.73 0.719387
Target:  5'- uACGCGUcGGCCGggUCGCGgcaaugaUGUcauaugccuaaacUCGAg -3'
miRNA:   3'- -UGCGCGuUCGGCuuAGCGC-------ACA-------------AGCU- -5'
7661 3' -53.6 NC_001973.1 + 12055 0.72 0.750989
Target:  5'- uGCGCGCGAGCCGA-UCGaCGUugccGgaCGAc -3'
miRNA:   3'- -UGCGCGUUCGGCUuAGC-GCA----CaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 30348 0.71 0.788923
Target:  5'- uCGCGCAGGCCGAGUucgggccgccggCGCGg---CGAc -3'
miRNA:   3'- uGCGCGUUCGGCUUA------------GCGCacaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 120588 0.71 0.807063
Target:  5'- cACGgGCGcGCCGAGUCGCG-GUgCGc -3'
miRNA:   3'- -UGCgCGUuCGGCUUAGCGCaCAaGCu -5'
7661 3' -53.6 NC_001973.1 + 46216 0.71 0.807063
Target:  5'- cGCGCGCGacGGCCGggUCaUGUGcgCGc -3'
miRNA:   3'- -UGCGCGU--UCGGCuuAGcGCACaaGCu -5'
7661 3' -53.6 NC_001973.1 + 106879 0.71 0.815895
Target:  5'- cGCGCGCcGGCCGAAccgugCGCGcGgcaaUCGAc -3'
miRNA:   3'- -UGCGCGuUCGGCUUa----GCGCaCa---AGCU- -5'
7661 3' -53.6 NC_001973.1 + 74804 0.7 0.833042
Target:  5'- gGCGCGCAcgcgaGGCgCGucgugCGCGUGcUCGAc -3'
miRNA:   3'- -UGCGCGU-----UCG-GCuua--GCGCACaAGCU- -5'
7661 3' -53.6 NC_001973.1 + 123517 0.7 0.84134
Target:  5'- gGCGCGCucGCCGGcgcagugcagCGCGUGaaCGAa -3'
miRNA:   3'- -UGCGCGuuCGGCUua--------GCGCACaaGCU- -5'
7661 3' -53.6 NC_001973.1 + 54062 0.7 0.857348
Target:  5'- cCGUGCAAGCCGA-UCGCGaaacugUCGu -3'
miRNA:   3'- uGCGCGUUCGGCUuAGCGCaca---AGCu -5'
7661 3' -53.6 NC_001973.1 + 133336 0.7 0.857348
Target:  5'- cGCGCGCGAcGCCGAccGUCGCGaacccgcucUCGGc -3'
miRNA:   3'- -UGCGCGUU-CGGCU--UAGCGCaca------AGCU- -5'
7661 3' -53.6 NC_001973.1 + 120748 0.7 0.865044
Target:  5'- gGCGCGCGcAGCCGc--CGaCGUGUUCc- -3'
miRNA:   3'- -UGCGCGU-UCGGCuuaGC-GCACAAGcu -5'
7661 3' -53.6 NC_001973.1 + 67438 0.69 0.879789
Target:  5'- uCGCGCAGGUCGGGcaccgggcUCGCGgacgcgUCGAu -3'
miRNA:   3'- uGCGCGUUCGGCUU--------AGCGCaca---AGCU- -5'
7661 3' -53.6 NC_001973.1 + 84362 0.69 0.886827
Target:  5'- aGCGCGUgaAAGCCGAccuGUCGCGgcucacCGAc -3'
miRNA:   3'- -UGCGCG--UUCGGCU---UAGCGCacaa--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.